dbp7 (SPBC21H7.04)

Gene Standard Namedbp7 ChromosomeII
Systematic IDSPBC21H7.04 Gene Start2258786
Synonyms Gene End2261031
ProductATP-dependent RNA helicase Dbp7 (predicted) Gene Length2246
Feature Typeprotein coding CDS Start2258814
Name Description CDS End2260943
Characterisation Statusbiological_role_inferred CDS Length2130

Ensembl Gene Location
  1. SPBC15C4.06c
  2. taf10
  3. SPBC21H7.03c
  4. dbp7
  5. SPRRNA.34
  6. sfc6
  7. SPBC21H7.06c
  8. SPNCRNA.1499
  9. snR5
  10. SPNCRNA.1500
  11. his5
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopydbp7delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0003723RNA bindingIEAUniProtKB:KW-0694GO_REF:0000037
GO:0004004ATP-dependent RNA helicase activityISOSGD:S000001732GO_REF:0000024
GO:0005524ATP bindingIEAUniProtKB:KW-0067GO_REF:0000037
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006364rRNA processingISOSGD:S000001732GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005730nucleolusIDAPMID:16823372
ISOSGD:S000001732GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
122587862261031

References

Region Start End Reference
five_prime_UTR22587862258813PMID:21511999
five_prime_UTR22587862258813PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00270 IPR011545 Pfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 163 355 43
PF13959 IPR025313 Pfam Domain of unknown function DUF4217 601 661 4
PF00271 IPR001650 Pfam Helicase, C-terminal 469 541 69
SM00490 IPR001650 SMART Helicase, C-terminal 456 541 67
SM00487 IPR014001 SMART Helicase, superfamily 1/2, ATP-binding domain 158 381 69
PS51194 IPR001650 Prosite Profiles Helicase, C-terminal 404 580 69
PS51192 IPR014001 Prosite Profiles Helicase, superfamily 1/2, ATP-binding domain 172 366 69
PS51195 IPR014014 Prosite Profiles RNA helicase, DEAD-box type, Q motif 138 167 23
G3DSA:3.40.50.300 Gene3D 124 379 279
G3DSA:3.40.50.300 Gene3D 380 569 279
SSF52540 SuperFamily 216 433 294
SSF52540 SuperFamily 465 559 294
PTHR24031:SF89 hmmpanther 25 709 1
PTHR24031 hmmpanther 25 709 26

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000174DEAD/DEAH box helicaseTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000174

Protein Properties

Ave. residue weight 111.19 Da
Charge 20.00
Isoelectric point 9.25
Molecular weight 78.83 kDa
Number of residues 709
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencePECO:0000014,
PECO:0000005		population_wide697.5PMID:23101633
RNA levelexperimental evidencePECO:0000014,
PECO:0000005		population_wide1.5PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.37PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPBC21H7.04 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC21H7.04 Retrieval of eukaryotic orthologs
BioGrid SPBC21H7.04 BioGRID Interaction Datasets
Bähler Lab SPBC21H7.04 Cell Cycle Expression Profile
Bähler Lab SPBC21H7.04 Meiosis/Sporulation Expression Profies
Bähler Lab SPBC21H7.04 Pheromone response/mating expression profiles
Bähler Lab SPBC21H7.04 Environmental stress expression profiles
Bähler Lab SPBC21H7.04 Bähler Lab Transcriptome Viewer
Cyclebase SPBC21H7.04 Cell Cycle Data
PInt SPBC21H7.04 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC21H7.04 Entrez Gene
WikiGene2540518ATP-dependent RNA helicase Dbp7 (predicted)
Uniprot_genenameDBP7
EntrezGene2540518ATP-dependent RNA helicase Dbp7 (predicted)
UniProtKB/SwissProtO60173ATP-dependent RNA helicase dbp7
ModBaseO60173Database of comparative protein structure models
Pfam Protein DomainsO60173Pfam Domain Arrangement
RefSeq PeptideNP_595929ATP-dependent RNA helicase Dbp7 (predicted)
RefSeq mRNANM_001021837972h- ATP-dependent RNA helicase Dbp7 (predicted) (dbp7), mRNA
European Nucleotide ArchiveCAA18864ENA Protein Mapping
SPD / RIKEN37/37D10Orfeome Localization Data
UniParcUPI000006AF18UniProt Archive

Literature for dbp7
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013