rpp202 (SPBC23G7.15c)


Gene Standard Namerpp202 Characterisation Statuspublished
Systematic IDSPBC23G7.15c Feature Typeprotein coding
Synonymsrpa4, rpp2-2 Name Description
Product60S acidic ribosomal protein A4 Product Size110aa, 11.12 kDa
Genomic Location Chromosome II, 2128518-2127990 (529nt); CDS:2128410-2128032 (379nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome255
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translational elongation194
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2315
Annotation ExtensionEvidenceWith/FromReference
cytosolic large ribosomal subunit83
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopyrpp202ΔNullPECO:0000005, PECO:0000137PMID:236978063759
Microscopyrpp202ΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0001489inviable vegetative cellCell growth assayrpa4-Not specifiedPMID:23256551254
FYPO:0002177viable vegetative cell with normal cell morphology3089
penetrance FYPO_EXT:0000001Microscopyrpp202ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
121285182128102
221280552127990

UTRs

Region Coordinates Reference
five_prime_UTR2128518..2128411PMID:21511999
three_prime_UTR2128031..2127990PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00428 Pfam IPR001813 Ribosomal protein L10/L12 17 109 7
PTHR21141 HMMPANTHER 1 110 8
PR00456 PRINTS IPR001859 Trypanosoma cruzi ribosomal protein P2-like 36 47 3
PR00456 PRINTS IPR001859 Trypanosoma cruzi ribosomal protein P2-like 97 108 3
PR00456 PRINTS IPR001859 Trypanosoma cruzi ribosomal protein P2-like 82 96 3
PR00456 PRINTS IPR001859 Trypanosoma cruzi ribosomal protein P2-like 21 32 3

View domain organization at Pfam

Protein Properties

Ave. residue weight 101.09 Da
Charge -16.00
Isoelectric point 3.68
Molecular weight 11.12 kDa
Number of residues 110
Modifications

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00046O-phospho-L-serineexperimental evidenceS100PMID:247631071670
present during mitotic M phaseexperimental evidenceS86PMID:21712547
present during mitotic M phaseexperimental evidenceS100PMID:21712547
MOD:00047O-phospho-L-threonineexperimental evidenceT85PMID:21712547692
present during mitotic M phase
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
336935during GO:0000080PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
345427during GO:0000084PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
333782during GO:0000085PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
327473during GO:0000087PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
335692during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
56268.32during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
39842.98during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
92during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
9during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4600
conserved in eukaryotes4514
conserved in metazoa3425
conserved in vertebrates3400
conserved in archaea237
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
zfs1CCCH tandem zinc finger protein, human Tristetraprolin homolog Zfs1, involved in mRNA catabolism Two-hybridPMID:19682301
sds23PP2A-type phosphatase inhibitor Sds23/Moc1 Two-hybridPMID:19682301
Genetic Interactions

Source: BioGRID

View these interactions in esyN

Gene Product Evidence Reference
sre2membrane-tethered transcription factor Sre2 Negative GeneticPMID:21504829
mis4adherin, cohesin loading factor Mis4 Negative GeneticPMID:23050226
dsc1Golgi Dsc E3 ligase complex subunit Dsc1 Negative GeneticPMID:21504829
External References
Database Identifier Description
NBRP SPBC23G7.15c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC23G7.15c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC23G7.15c BioGRID Interaction Datasets
Expression Viewer SPBC23G7.15c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC23G7.15c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC23G7.15c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC23G7.15c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC23G7.15c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC23G7.15c Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC23G7.15c Cell Cycle Data
GEO SPBC23G7.15c GEO profiles
PInt SPBC23G7.15c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC23G7.15c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC23G7.15c Fission yeast phenotypic data & analysis
SPD / RIKEN39/39G08Orfeome Localization Data
UniProtKB/SwissProtP1747860S acidic ribosomal protein P2-beta
ModBaseP17478Database of comparative protein structure models
STRINGP17478Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59587360S acidic ribosomal protein P2B
RefSeq mRNANM_001021779972h- 60S acidic ribosomal protein P2B (rpp202), mRNA
European Nucleotide ArchiveAAA35337.1ENA Protein Mapping
European Nucleotide ArchiveCAA22631.1ENA Protein Mapping
UniParcUPI000013426EUniProt Archive

Literature for rpp202

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014