sec9 (SPBC26H8.02c)

Gene Standard Namesec9 ChromosomeII
Systematic IDSPBC26H8.02c Gene Start3944032
Synonyms Gene End3941984
ProductSNAP-25 homologue, t-SNARE component Sec9 Gene Length2049
Feature Typeprotein coding CDS Start3943744
Name Description CDS End3942485
Characterisation Statuspublished CDS Length1260

Ensembl Gene Location
  1. dpm3
  2. SPBC1677.03c
  3. SPRRNA.36
  4. SPBTRNAASP.04
  5. thi2
  6. sec9
  7. SPNCRNA.1650
  8. snoR68
  9. cho2
  10. SPBC26H8.04c
Fission Yeast Phenotype Ontology

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002061inviable vegetative cell populationno_name (unrecorded)unrecordedPMID:16272747
Microscopysec9delta (deletion)deletionPMID:20473289
GO Molecular Function

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0005484SNAP receptor activityISOSGD:S000003241GO_REF:0000024
GO Biological Process

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0006886intracellular protein transportNASGO_REF:0000051
GO:0006893Golgi to plasma membrane transportISOSGD:S000003241GO_REF:0000024
GO:0006906vesicle fusionISOSGD:S000004619GO_REF:0000024
GO:0030437ascospore formationIMPPMID:16272747
GO:0031321ascospore-type prospore assemblyIGIpsy1PMID:16272747
IMPPMID:16272747
GO Cellular Component

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0005628prospore membraneISOSGD:S000004619GO_REF:0000024
Transcript
Contact Curators
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
139440323941984

References

Region Start End Reference
three_prime_UTR39424843941984PMID:21511999
three_prime_UTR39424843941984PMID:21511999
five_prime_UTR39440323943745PMID:21511999
Protein Features
Contact Curators

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
SM00397 IPR000727 SMART Target SNARE coiled-coil domain 351 418 9
SM00397 IPR000727 SMART Target SNARE coiled-coil domain 198 265 9
PS50192 IPR000727 Prosite Profiles Target SNARE coiled-coil domain 356 418 9
G3DSA:1.20.5.110 Gene3D 190 266 12
G3DSA:1.20.5.110 Gene3D 344 418 12
SSF58038 SuperFamily 192 262 9
SSF58038 SuperFamily 346 418 9
Coil ncoils Rabaptin coiled-coil domain 241 262 974
PTHR19305 hmmpanther 132 418 1
PTHR19305:SF0 hmmpanther 132 418 1

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000345SNARETemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000345

Protein Properties

Ave. residue weight 110.81 Da
Charge -2.50
Isoelectric point 6.09
Molecular weight 46.43 kDa
Number of residues 419
Sequence
Contact Curators
Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide609.31PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide2.2PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide4.9PMID:23101633
Disease Association
DescriptionQualifierReference
schizophrenia
Species Distribution
DescriptionQualifierReference
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

Contact Curators
Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
psy1SNARE Psy1 Dosage RescuePMID:16272747
Contact Curators
External References
Database Identifier Description
NBRP SPBC26H8.02c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC26H8.02c Retrieval of eukaryotic orthologs
BioGrid SPBC26H8.02c BioGRID Interaction Datasets
Bähler Lab SPBC26H8.02c Cell Cycle Expression Profile
Bähler Lab SPBC26H8.02c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC26H8.02c Pheromone response/mating expression profiles
Bähler Lab SPBC26H8.02c Environmental stress expression profiles
Bähler Lab SPBC26H8.02c Bähler Lab Transcriptome Viewer
Cyclebase SPBC26H8.02c Cell Cycle Data
PInt SPBC26H8.02c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC26H8.02c Entrez Gene
SPD / RIKEN20/20B06Orfeome Localization Data
WikiGene2540623protein transport protein
Uniprot_genenameSEC9
EntrezGene2540623protein transport protein
UniProtKB/SwissProtO74786Protein transport protein sec9
ModBaseO74786Database of comparative protein structure models
Pfam Protein DomainsO74786Pfam Domain Arrangement
RefSeq PeptideNP_596643protein transport protein
RefSeq mRNANM_001022565972h- protein transport protein (sec9), mRNA
European Nucleotide ArchiveCAA21094ENA Protein Mapping
UniParcUPI000006991BUniProt Archive

Literature for sec9
Contact Curators

Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013