SPBC29A10.09c

Gene Standard NameUnassigned ChromosomeII
Systematic IDSPBC29A10.09c Gene Start2557200
Synonyms Gene End2554177
ProductCAF1 family ribonuclease (predicted) Gene Length3024
Feature Typeprotein coding CDS Start2556947
Name Description CDS End2555664
Characterisation Statusbiological_role_inferred CDS Length1284

Ensembl Gene Location
  1. ely5
  2. pom152
  3. SPNCRNA.1527
  4. gas2
  5. SPBC29A10.09c
  6. SPNCRNA.1528
  7. SPBC29A10.10c
Fission Yeast Phenotype Ontology

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0001491viable vegetative cellMicroscopySPBC29A10.09cdelta (deletion)deletionPMID:20473289
GO Molecular Function

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0003676nucleic acid bindingISMPFAM:PF01424GO_REF:0000001
GO:0003723RNA bindingICGO:0003676, GO:0004540GO_REF:0000001
GO:0004540ribonuclease activityISMPFAM:PF04857GO_REF:0000001
GO Biological Process

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0006402mRNA catabolic processISMPFAM:PF04857GO_REF:0000001
GO Cellular Component

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIEAIPR006941GO_REF:0000002
Transcript
Contact Curators
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
125572002554177

References

Region Start End Reference
three_prime_UTR25556632554177PMID:21511999
Protein Features
Contact Curators

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF04857 IPR006941 Pfam Ribonuclease CAF1 1 396 2
G3DSA:3.30.420.10 Gene3D 2 128 31
G3DSA:3.30.420.10 Gene3D 257 407 31
SSF53098 IPR012337 SuperFamily 259 350 34
SSF53098 IPR012337 SuperFamily 378 410 34
SSF53098 IPR012337 SuperFamily 1 130 34
PTHR15092:SF9 hmmpanther 1 425 1
PTHR15092 hmmpanther 1 425 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.77 Da
Charge 8.50
Isoelectric point 8.14
Molecular weight 49.01 kDa
Number of residues 427
Sequence
Contact Curators
Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000005,
PECO:0000014		population_widePMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.18PMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide0.19PMID:23101633
Species Distribution
DescriptionQualifierReference
no apparent S. cerevisiae ortholog
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

Contact Curators
Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
hrr1Helicase Required for RNAi-mediated heterochromatin assembly Hrr1 Negative GeneticPMID:22681890
swd3WD repeat protein Swd3 Negative GeneticPMID:22681890
vph2endoplasmic reticulum membrane protein involved in assembly of the V-ATPase (predicted) Positive GeneticPMID:22681890
Contact Curators
External References
Database Identifier Description
NBRP SPBC29A10.09c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC29A10.09c Retrieval of eukaryotic orthologs
BioGrid SPBC29A10.09c BioGRID Interaction Datasets
Bähler Lab SPBC29A10.09c Cell Cycle Expression Profile
Bähler Lab SPBC29A10.09c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC29A10.09c Pheromone response/mating expression profiles
Bähler Lab SPBC29A10.09c Environmental stress expression profiles
Bähler Lab SPBC29A10.09c Bähler Lab Transcriptome Viewer
Cyclebase SPBC29A10.09c Cell Cycle Data
PInt SPBC29A10.09c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC29A10.09c Entrez Gene
SPD / RIKEN51/51D05Orfeome Localization Data
EntrezGene2540515CAF1 family ribonuclease
WikiGene2540515CAF1 family ribonuclease
UniProtKB/SwissProtO94386Uncharacterized protein C29A10.09c
ModBaseO94386Database of comparative protein structure models
Pfam Protein DomainsO94386Pfam Domain Arrangement
RefSeq PeptideNP_596054CAF1 family ribonuclease
RefSeq mRNANM_001021965972h- CAF1 family ribonuclease (SPBC29A10.09c), mRNA
European Nucleotide ArchiveCAA22437ENA Protein Mapping
SPD / RIKEN51/51D05Orfeome Localization Data

Literature for SPBC29A10.09c
Contact Curators

Search: UK PMC or PubMed

Release Version: PomBase:18.34 - 04 Apr 2013