SPBC29A3.06

Synonyms ChromosomeII
ProductCGI-48 family (predicted) Gene Start2048170
Feature Typeprotein coding Gene End2050092
Name Description CDS Start2048336
Characterisation Statusbiological_role_inferred CDS End2049896

Ensembl Gene Location
his7 SPBC29A3.03c SPNCRNA.1483 snoZ30 rpl8 vps71 > SPBC29A3.06 < sab14 SPNCRNA.386 pof4 SPBC29A3.09c atp14
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
120481702048227
220483362049892
320498942049896
420500072050092

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF00400 Pfam WD40 repeat 431 460 21.3 107
PF00400 Pfam WD40 repeat 217 244 22.4 107
50978 Superfamily 202 518 131.5 127
SM00320 Smart WD40 repeat 205 245 23.3 121
SM00320 Smart WD40 repeat 380 420 16.8 121
SM00320 Smart WD40 repeat 250 289 14.9 121
SM00320 Smart WD40 repeat 429 470 14.3 121
SM00320 Smart WD40 repeat 473 514 4.9 121
PS50082 PROSITE WD40 repeat 257 298 9.372 100
PS50294 PROSITE WD40-repeat-containing domain 213 298 11.207 104

Protein Properties

Ave. residue weight 112.61 Da
Charge -16.00
Isoelectric point 4.83
Molecular weight 58.44 kDa
Number of residues 519
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000049inviableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000049

Gene Ontology Annotations

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Biological Process
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0006364rRNA processingISS SGD:S000003605GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0006364

Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0032040small-subunit processomeISS SGD:S000003605GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0032040

Warning

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DescriptionSourceAll Genes
frameshifted Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000108
sequence error in genomic data Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000129

Protein Family

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DescriptionSourceAll Genes
WD repeat proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000190

Species Distribution

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DescriptionSourceAll Genes
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094

Manually Curated Orthologs

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SpeciesGeneDescription


External References

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Database Identifier Description
NBRP SPBC29A3.06 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC29A3.06 Retrieval of eukaryotic orthologs
BioGrid SPBC29A3.06 BioGRID Interaction Datasets
Bähler Lab SPBC29A3.06 Cell Cycle Expression Profile
Bähler Lab SPBC29A3.06 Meiosis/Sporulation Expression Profies
Bähler Lab SPBC29A3.06 Pheromone response/mating expression profiles
Bähler Lab SPBC29A3.06 Environmental stress expression profiles
Bähler Lab SPBC29A3.06 Bähler Lab Transcriptome Viewer
Cyclebase SPBC29A3.06 Cell Cycle Data
Entrez Gene SPBC29A3.06 Link to Entrez Gene
SPD / RIKEN35/35A03Orfeome Localization Data
UniProtKB/SwissProtP78750Probable U3 small nucleolar RNA-associated protein 18
ArrayExpressP78750Link to ArrayExpress
RefSeq PeptideNP_595834CGI-48 family
RefSeq mRNANM_001021738972h- CGI-48 family (SPBC29A3.06), mRNA
European Nucleotide ArchiveCU329671ENA EMBL mapping
European Nucleotide ArchiveD89098ENA EMBL mapping
European Nucleotide ArchiveBAA13761ENA Protein Mapping
European Nucleotide ArchiveCAA18383ENA Protein Mapping
UniParcUPI0001B06254UniProt Archive

Literature for SPBC29A3.06

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Search: UK PMC or PubMed