sab14 (SPBC29A3.07c)

Synonyms ChromosomeII
ProductU2 snRNP-associated protein SF3B14 ortholog (predicted) Gene Start2050956
Feature Typeprotein coding Gene End2049997
Name Description CDS Start2050695
Characterisation Statusbiological_role_inferred CDS End2050258

Ensembl Gene Location
SPBC29A3.03c SPNCRNA.1483 snoZ30 rpl8 vps71 SPBC29A3.06 > sab14 < SPNCRNA.386 pof4 SPBC29A3.09c atp14 SPBC29A3.11c
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
120509562050452
220503582049997

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF00076 Pfam RNA recognition motif domain 14 80 59.6 70
54928 Superfamily 11 89 76.5 76
SM00360 Smart RNA recognition motif domain 13 83 81 69
PS50102 PROSITE RNA recognition motif domain 12 87 16.108 72

Protein Properties

Ave. residue weight 115.46 Da
Charge 3.50
Isoelectric point 9.27
Molecular weight 13.16 kDa
Number of residues 114
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Biological Process
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0045292nuclear mRNA cis splicing, via spliceosomeISS UniProtKB:Q9Y3B4GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0045292

Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005686U2 snRNPISS UniProtKB:Q9Y3B4GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005686

Molecular Function
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0000384first spliceosomal transesterification activityISS UniProtKB:Q9Y3B4GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0000384
GO:0003723RNA bindingISS PFAM:PF00076GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0003723

Protein Family

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DescriptionSourceAll Genes
rrm RNA recognition motifTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000302

Species Distribution

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DescriptionSourceAll Genes
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
no apparent S. cerevisiae orthologTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000055
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094

Interactions

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Physical Interactions from BioGRID

Gene Feature Evidence Source
dre4splicing associated factor Dre4 Affinity Capture-MS
prp19ubiquitin-protein ligase E4 Affinity Capture-MS
saf3splicing associated factor Saf3 Affinity Capture-MS
prp1U4/U6 x U5 tri-snRNP complex subunit Prp1 Affinity Capture-MS
cwf2RNA-binding protein Cwf2 Affinity Capture-MS

External References

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Database Identifier Description
NBRP SPBC29A3.07c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC29A3.07c Retrieval of eukaryotic orthologs
BioGrid SPBC29A3.07c BioGRID Interaction Datasets
Bähler Lab SPBC29A3.07c Cell Cycle Expression Profile
Bähler Lab SPBC29A3.07c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC29A3.07c Pheromone response/mating expression profiles
Bähler Lab SPBC29A3.07c Environmental stress expression profiles
Bähler Lab SPBC29A3.07c Bähler Lab Transcriptome Viewer
Cyclebase SPBC29A3.07c Cell Cycle Data
Entrez Gene SPBC29A3.07c Link to Entrez Gene
SPD / RIKEN42/42E05Orfeome Localization Data
UniProtKB/SwissProtO59670Pre-mRNA branch site p14-like protein
ArrayExpressO59670Link to ArrayExpress
RefSeq PeptideNP_595835Pre-mRNA branch site p14-like protein
RefSeq mRNANM_001021739972h- Pre-mRNA branch site p14-like protein (SPBC29A3.07c), mRNA
European Nucleotide ArchiveCU329671ENA EMBL mapping
European Nucleotide ArchiveCAA18384ENA Protein Mapping
UniParcUPI0001B06255UniProt Archive

Literature for sab14

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Search: UK PMC or PubMed