rps902 (SPBC29A3.12)


Gene Standard Namerps902 Characterisation Statusbiological_role_inferred
Systematic IDSPBC29A3.12 Feature Typeprotein coding
Synonymsrps9-2, rps9b Name Description
Product40S ribosomal protein S9 (predicted) Product Size192aa, 22.24 kDa
Genomic Location Chromosome II, 2059741-2060438 (698nt); CDS:2059792-2060370 (579nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
rRNA binding56
Annotation ExtensionEvidenceWith/FromReference
structural constituent of ribosome255
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation473
Annotation ExtensionEvidenceWith/FromReference
ribosome biogenesis337
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2315
Annotation ExtensionEvidenceWith/FromReference
cytosolic small ribosomal subunit65
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0001701sensitive to bortezomib256
expressivity FYPO_EXT:0000003Cell growth assayrps902ΔNullPECO:0000005, PECO:0000137PMID:21760946
FYPO:0002060viable vegetative cell populationMicroscopyrps902ΔNullPMID:204732893759
Microscopyrps902ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0001122elongated vegetative cellMicroscopyrps902+ (wild type)OverexpressionPMID:12237855685
FYPO:0002177viable vegetative cell with normal cell morphology3089
penetrance FYPO_EXT:0000001Microscopyrps902ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
120597412060438

UTRs

Region Coordinates Reference
five_prime_UTR2059741..2059791PMID:21511999
three_prime_UTR2060371..2060438PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01479 Pfam IPR002942 RNA-binding S4 domain 107 150 7
PF00163 Pfam IPR001912 Ribosomal protein S4/S9, N-terminal 6 106 3
SM00363 SMART IPR002942 RNA-binding S4 domain 107 175 6
PS00632 Prosite Patterns IPR018079 Ribosomal protein S4, conserved site 105 129 3
PS50889 Prosite Profiles IPR002942 RNA-binding S4 domain 107 181 8
PTHR11831 HMMPANTHER IPR022801 Ribosomal protein S4/S9 1 192 4
PTHR11831:SF3 HMMPANTHER 1 192 2
3.10.290.10 Gene3D IPR002942 RNA-binding S4 domain 106 151 5
SSF55174 SuperFamily 10 158 5
TIGR01018 tigrfam IPR005710 Ribosomal protein S4/S9, eukaryotic/archaeal 3 164 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.86 Da
Charge 18.50
Isoelectric point 11.04
Molecular weight 22.24 kDa
Number of residues 192
Modifications

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00046O-phospho-L-serineIDAS179PMID:182575171670
present during cellular response to thiabendazole
present during cellular response to thiabendazoleIDAS89PMID:18257517
present during mitotic M phaseexperimental evidenceS179PMID:21712547
experimental evidenceS179PMID:24763107
MOD:00696phosphorylated residueNASPMID:182575171922
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
488751during GO:0000080PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
488265during GO:0000084PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
486669during GO:0000085PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
529502during GO:0000087PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
489435during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
3458.03during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
8567.55during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
74during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
5.7during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4600
conserved in eukaryotes4514
conserved in bacteria1000
conserved in metazoa3425
conserved in vertebrates3400
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
sog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
pab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
External References
Database Identifier Description
NBRP SPBC29A3.12 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC29A3.12 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC29A3.12 BioGRID Interaction Datasets
Expression Viewer SPBC29A3.12 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC29A3.12 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC29A3.12 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC29A3.12 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC29A3.12 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC29A3.12 Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC29A3.12 Cell Cycle Data
GEO SPBC29A3.12 GEO profiles
PInt SPBC29A3.12 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC29A3.12 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC29A3.12 Fission yeast phenotypic data & analysis
SPD / RIKEN39/39H11Orfeome Localization Data
UniProtKB/SwissProtO5967540S ribosomal protein S9-B
ModBaseO59675Database of comparative protein structure models
STRINGO59675Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59584040S ribosomal protein S9
RefSeq mRNANM_001021744972h- 40S ribosomal protein S9 (rps902), mRNA
European Nucleotide ArchiveAB029515ENA EMBL mapping
European Nucleotide ArchiveBAA87233.1ENA Protein Mapping
European Nucleotide ArchiveCAA18389.1ENA Protein Mapping
UniParcUPI00001620DCUniProt Archive

Literature for rps902

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014