rps902 (SPBC29A3.12)


Gene Standard Namerps902 Characterisation Statusbiological_role_inferred
Systematic IDSPBC29A3.12 Feature Typeprotein coding
Synonymsrps9-2, rps9b Name Description
Product40S ribosomal protein S9 (predicted) Product Size192aa, 22.24 kDa
Genomic Location Chromosome II, 2059741-2060438 (698nt); CDS:2059792-2060370 (579nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
rRNA binding55
Annotation ExtensionEvidenceWith/FromReference
structural constituent of ribosome255
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation465
Annotation ExtensionEvidenceWith/FromReference
ribosome biogenesis338
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2314
Annotation ExtensionEvidenceWith/FromReference
cytosolic small ribosomal subunit65
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term NameAlleleExpressionCount
sensitive to bortezomibrps902ΔNull256
viable vegetative cell populationrps902ΔNull3809

Cell Phenotype

Term NameAlleleExpressionCount
elongated vegetative cellrps902+ (wild type)Overexpression174
viable vegetative cell with normal cell morphologyrps902ΔNull3094
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons2059741..2060438
mRNA2059741..2060438
5' UTR2059741..2059791PMID:21511999
CDS2059792..2060370
3' UTR2060371..2060438PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00163 Pfam IPR001912 Ribosomal protein S4/S9, N-terminal 6 106 3
PF01479 Pfam IPR002942 RNA-binding S4 domain 107 150 7
SM00363 SMART IPR002942 RNA-binding S4 domain 107 175 6
PS00632 Prosite Patterns IPR018079 Ribosomal protein S4, conserved site 105 129 3
PS50889 Prosite Profiles IPR002942 RNA-binding S4 domain 107 181 8
PTHR11831 HMMPANTHER IPR022801 Ribosomal protein S4/S9 4 192 4
3.10.290.10 Gene3D IPR002942 RNA-binding S4 domain 106 151 5
SSF55174 SuperFamily 10 158 5
TIGR01018 tigrfam IPR005710 Ribosomal protein S4/S9, eukaryotic/archaeal 3 164 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.86 Da
Charge 18.50
Isoelectric point 11.04
Molecular weight 22.24 kDa
Number of residues 192
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serine 1672
present during mitotic M phase, cellular response to thiabendazoleS179
present during cellular response to thiabendazoleS89
S179
Annotation ExtensionEvidenceResidueReference
present during cellular response to thiabendazole IDA S89 PMID:18257517
experimental evidence S179 PMID:24763107
present during cellular response to thiabendazole IDA S179 PMID:18257517
present during mitotic M phase experimental evidence S179 PMID:21712547
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
488751during GO:0000080PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
488265during GO:0000084PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
486669during GO:0000085PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
529502during GO:0000087PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
3458.03during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
489435during GO:0072690PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
8567.55during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
74during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
5.7during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4603
conserved in eukaryotes4514
conserved in bacteria1001
conserved in metazoa3424
conserved in vertebrates3399
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bycid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
affinity captured bynak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
affinity captured bypab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
affinity captured bysog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
affinity captured bytea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
External References
Database Identifier Description
NBRP SPBC29A3.12 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC29A3.12 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC29A3.12 BioGRID Interaction Datasets
Expression Viewer SPBC29A3.12 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC29A3.12 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC29A3.12 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC29A3.12 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC29A3.12 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC29A3.12 Transcriptome Viewer (Bähler Lab)
GEO SPBC29A3.12 GEO profiles
PInt SPBC29A3.12 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC29A3.12 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC29A3.12 Fission yeast phenotypic data & analysis
Cyclebase SPBC29A3.12.1 Cell Cycle Data
SPD / RIKEN39/39H11Orfeome Localization Data
UniProtKB/SwissProtO5967540S ribosomal protein S9-B
ModBaseO59675Database of comparative protein structure models
STRINGO59675Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59584040S ribosomal protein S9
RefSeq mRNANM_001021744972h- 40S ribosomal protein S9 (rps902), mRNA
European Nucleotide ArchiveAB029515ENA EMBL mapping
European Nucleotide ArchiveBAA87233.1ENA Protein Mapping
European Nucleotide ArchiveCAA18389.1ENA Protein Mapping
UniParcUPI00001620DCUniProt Archive

Literature for rps902

Search: Europe PMC or PubMed

Release Version: PomBase:26_52 - 11 May 2015