rps902 (SPBC29A3.12)


Gene Standard Namerps902 Characterisation Statusbiological role inferred
Systematic IDSPBC29A3.12 Feature Typeprotein coding
Synonymsrps9-2, rps9b Name Description
Product40S ribosomal protein S9 (predicted) Product Size192aa, 22.24 kDa
Genomic Location Chromosome II, 2059741-2060438 (698nt); CDS:2059792-2060370 (579nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
rRNA binding57
Annotation ExtensionEvidenceWith/FromReference
structural constituent of ribosome257
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation469
Annotation ExtensionEvidenceWith/FromReference
ribosome biogenesis338
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2306
Annotation ExtensionEvidenceWith/FromReference
cytosolic small ribosomal subunit64
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
sensitive to bortezomibrps902Δ255
viable vegetative cell populationrps902Δ3837

Cell Phenotype

Term NameGenotypesCount
elongated vegetative cellrps902+791
viable vegetative cell with normal cell morphologyrps902Δ3100
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons2059741..2060438
5' UTR2059741..2059791PMID:21511999
3' UTR2060371..2060438PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00163 Pfam IPR001912 Ribosomal protein S4/S9, N-terminal 6 62 3
PF01479 Pfam IPR002942 RNA-binding S4 domain 107 150 7
SM00363 SMART IPR002942 RNA-binding S4 domain 107 175 6
PS50889 Prosite Profiles IPR002942 RNA-binding S4 domain 107 181 8
PS00632 Prosite Patterns IPR018079 Ribosomal protein S4, conserved site 105 129 3
PTHR11831 HMMPANTHER IPR022801 Ribosomal protein S4/S9 6 192 4
PTHR11831:SF5 HMMPANTHER 6 192 1
3.10.290.10 Gene3D IPR002942 RNA-binding S4 domain 106 151 5
SSF55174 SuperFamily 10 158 5
Coil ncoils Predicted coiled-coil protein (DUF2205) 188 192 1057
TIGR01018 TIGRFAM IPR005710 Ribosomal protein S4/S9, eukaryotic/archaeal 3 164 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.86 Da
Charge 18.50
Codon Adaptation Index 0.73
Isoelectric point 11.04
Molecular weight 22.24 kDa
Number of residues 192
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serine 1676
present during cellular response to thiabendazole, mitotic M phaseS179
present during cellular response to thiabendazoleS89
S179
Annotation ExtensionEvidenceResidueReference
present during cellular response to thiabendazole IDA S179 PMID:18257517
present during cellular response to thiabendazole IDA S89 PMID:18257517
present during mitotic M phase experimental evidence S179 PMID:21712547
experimental evidence S179 PMID:24763107
ubiquitinylated lysineK120, K138 512
Annotation ExtensionEvidenceResidueReference
IDA PMID:26412298
mass spectrometry evidence K120 PMID:26412298
mass spectrometry evidence K138 PMID:26412298
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for rps902 (SPBC29A3.12)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
488751during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
488265during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
486669during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
529502during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
3458.03during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
489435during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
8567.55during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
74during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
5.7during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4605
conserved in eukaryotes4515
conserved in bacteria1001
conserved in metazoa3424
conserved in vertebrates3399
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load genes that interact physically with SPBC29A3.12 into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bynak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
affinity captured bytea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
affinity captured bycid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
affinity captured bysog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
affinity captured bypab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
binds activation domain construct withnap2nucleosome assembly protein Nap2 Two-hybridPMID:26771498
External References
Database Identifier Description
NBRP SPBC29A3.12 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC29A3.12 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC29A3.12 BioGRID Interaction Datasets
Expression Viewer SPBC29A3.12 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC29A3.12 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC29A3.12 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC29A3.12 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC29A3.12 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC29A3.12 Transcriptome Viewer (Bähler Lab)
GEO SPBC29A3.12 GEO profiles
PInt SPBC29A3.12 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC29A3.12 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC29A3.12 Fission yeast phenotypic data & analysis
Cyclebase SPBC29A3.12.1 Cell Cycle Data
SPD / RIKEN39/39H11Orfeome Localization Data
UniProtKB/SwissProtO5967540S ribosomal protein S9-B
ModBaseO59675Database of comparative protein structure models
STRINGO59675Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59584040S ribosomal protein S9
RefSeq mRNANM_001021744972h- 40S ribosomal protein S9 (rps902), mRNA

Literature for rps902

Search: Europe PMC or PubMed

Release Version: PomBase:30_58 - 11 Mar 2016