rpl26 (SPBC29B5.03c)

Gene Standard Namerpl26 ChromosomeII
Systematic IDSPBC29B5.03c Gene Start1558705
Synonyms Gene End1558179
Product60S ribosomal protein L26 (predicted) Gene Length527
Feature Typeprotein coding CDS Start1558620
Name Description CDS End1558240
Characterisation Statusbiological_role_inferred CDS Length381

Ensembl Gene Location
  1. isp4
  2. SPNCRNA.1442
  3. SPNCRNA.1443
  4. SPNCRNA.1444
  5. rpl26
  6. SPBC29B5.04c
  7. SPBC27.01c
  8. SPNCRNA.1445
  9. ask1
  10. SPNCRNA.1446
  11. meu25
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopyrpl26delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0003735structural constituent of ribosomeISOSGD:S000004336GO_REF:0000024
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0002181cytoplasmic translationNASGO_REF:0000051
GO:0006412translationISOSGD:S000004336GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005730nucleolusIDAPMID:16823372
GO:0005829cytosolIDAPMID:16823372
GO:0022625cytosolic large ribosomal subunitISOSGD:S000004336GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
115587051558179

References

Region Start End Reference
five_prime_UTR15587051558621PMID:21511999
five_prime_UTR15587051558621PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00467 IPR005824 Pfam KOW 52 82 10
SM00739 IPR005824 SMART KOW 48 75 5
PS01108 IPR005825 Prosite Patterns Ribosomal protein L24/L26, conserved site 52 69 1
G3DSA:2.30.30.30 IPR014722 Gene3D 8 122 11
SSF50104 IPR008991 SuperFamily 8 123 16
PTHR11143 IPR005756 hmmpanther Ribosomal protein L26/L24P, eukaryotic/archaeal 2 122 1
TIGR01080 IPR005756 tigrfam Ribosomal protein L26/L24P, eukaryotic/archaeal 9 122 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.82 Da
Charge 21.00
Isoelectric point 11.76
Molecular weight 14.34 kDa
Number of residues 126
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencePECO:0000014,
PECO:0000005		population_wide13612.83PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide23255.87PMID:23101633
RNA levelexperimental evidencePECO:0000014,
PECO:0000005		population_wide75PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide6.4PMID:23101633
Species Distribution
DescriptionQualifierReference
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in archaea
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
SPBC16C6.03cribosome assembly protein (predicted) Negative GeneticPMID:22681890
nop52nucleolar protein Nop52 family (predicted) Negative GeneticPMID:22681890
SPAC10F6.13caspartate aminotransferase (predicted) Negative GeneticPMID:22681890
SPBC18H10.18csequence orphan Negative GeneticPMID:22681890
saf4splicing associated factor Saf4 Negative GeneticPMID:22681890
SPAC17H9.13cglutamate 5-kinase (predicted) Negative GeneticPMID:22681890
mms19Dos2 silencing complex subunit Mms19 Negative GeneticPMID:22681890
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
air1zinc knuckle TRAMP complex subunit Air1 Affinity Capture-MSPMID:20403971
lrp1leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
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External References
Database Identifier Description
NBRP SPBC29B5.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC29B5.03c Retrieval of eukaryotic orthologs
BioGrid SPBC29B5.03c BioGRID Interaction Datasets
Bähler Lab SPBC29B5.03c Cell Cycle Expression Profile
Bähler Lab SPBC29B5.03c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC29B5.03c Pheromone response/mating expression profiles
Bähler Lab SPBC29B5.03c Environmental stress expression profiles
Bähler Lab SPBC29B5.03c Bähler Lab Transcriptome Viewer
Cyclebase SPBC29B5.03c Cell Cycle Data
PInt SPBC29B5.03c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC29B5.03c Entrez Gene
EntrezGene254027460S ribosomal protein L26
Uniprot_genenameRPL26
WikiGene254027460S ribosomal protein L26
UniProtKB/SwissProtP7894660S ribosomal protein L26
ModBaseP78946Database of comparative protein structure models
Pfam Protein DomainsP78946Pfam Domain Arrangement
RefSeq PeptideNP_59565460S ribosomal protein L26
RefSeq mRNANM_001021548972h- 60S ribosomal protein L26 (rpl26), mRNA
European Nucleotide ArchiveBAA12196ENA Protein Mapping
European Nucleotide ArchiveCAC05512ENA Protein Mapping
SPD / RIKEN31/31C12Orfeome Localization Data
UniParcUPI0000133DEFUniProt Archive

Literature for rpl26
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013