eri1 (SPBC30B4.08)

Synonyms ChromosomeII
Productdouble-strand siRNA ribonuclease Eri1 Gene Start1320595
Feature Typeprotein coding Gene End1323215
Name Description CDS Start1320692
Characterisation Statuspublished CDS End1321833

Ensembl Gene Location
kap109 SPBC30B4.06c SPNCRNA.1429 tfb4 > eri1 < mmm1 SPBC27B12.02 erg32 SPBC27B12.04c SPBC27B12.05 prl15
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
113205951320819
213208971321004
313210661321471
413215341323215

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF00929 Pfam Exonuclease, RNase T/DNA polymerase III 82 274 58.5 6
53098 Superfamily 75 293 103.6 30
SM00479 Smart Exonuclease 81 286 144.1 6
PS50800 PROSITE DNA-binding SAP 20 54 9.726 6

Protein Properties

Ave. residue weight 118.10 Da
Charge -3.00
Isoelectric point 5.56
Molecular weight 36.97 kDa
Number of residues 313
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Biological Process
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0000467exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)IMPTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0000467
GO:0060906negative regulation of chromatin silencing by small RNAIMPTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0060906

Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005737cytoplasmIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005737
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829

Molecular Function
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:00001753'-5'-exoribonuclease activityIMPTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0000175
GO:0032296double-stranded RNA-specific ribonuclease activityIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0032296

Warning

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DescriptionSourceAll Genes
gene structure updated Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000070

Protein Family

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DescriptionSourceAll Genes
SAP domain Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with the citation reference [author (year)]Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000657

Species Distribution

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DescriptionSourceAll Genes
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
no apparent S. cerevisiae orthologTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000055
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095


External References

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Database Identifier Description
NBRP SPBC30B4.08 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC30B4.08 Retrieval of eukaryotic orthologs
BioGrid SPBC30B4.08 BioGRID Interaction Datasets
Bähler Lab SPBC30B4.08 Cell Cycle Expression Profile
Bähler Lab SPBC30B4.08 Meiosis/Sporulation Expression Profies
Bähler Lab SPBC30B4.08 Pheromone response/mating expression profiles
Bähler Lab SPBC30B4.08 Environmental stress expression profiles
Bähler Lab SPBC30B4.08 Bähler Lab Transcriptome Viewer
Cyclebase SPBC30B4.08 Cell Cycle Data
Entrez Gene SPBC30B4.08 Link to Entrez Gene
SPD / RIKEN18/18A07Orfeome Localization Data
UniProtKB/SwissProtQ08I433'-5' exonuclease eri1
ArrayExpressQ08I43Link to ArrayExpress
RefSeq_mRNA_predictedXM_001713077972h- double-strand siRNA ribonuclease (eri1), mRNA
RefSeq_peptide_predictedXP_001713129double-strand siRNA ribonuclease
European Nucleotide ArchiveAB004539ENA EMBL mapping
European Nucleotide ArchiveCU329671ENA EMBL mapping
European Nucleotide ArchiveBAA21459ENA Protein Mapping
European Nucleotide ArchiveCAL48264ENA Protein Mapping
UniParcUPI0000E27B2BUniProt Archive

Literature for eri1

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Search: UK PMC or PubMed