rsm27 (SPBC30D10.12c)


Gene Standard Namersm27 Characterisation Statusbiological_role_inferred
Systematic IDSPBC30D10.12c Feature Typeprotein coding
Synonyms Name Description
Productmitochondrial ribosomal protein subunit S27 (predicted) Product Size93aa, 10.70 kDa
Genomic Location Chromosome II, 3072290-3074762 (2473nt); CDS:3072394-3072793 (400nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome255
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation473
Annotation ExtensionEvidenceWith/FromReference
mitochondrial translation153
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
mitochondrial small ribosomal subunit32
Annotation ExtensionEvidenceWith/FromReference
mitochondrion758
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Inviable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002061inviable vegetative cell populationMicroscopyrsm27ΔNullPMID:204732891338
Microscopyrsm27ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002111inviable tapered vegetative cell134
penetrance FYPO_EXT:0000001Microscopyrsm27ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
130722903072629
230726953072732
330727863074762

UTRs

Region Coordinates Reference
three_prime_UTR3072794..3074762PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF08293 Pfam IPR013219 Ribosomal protein S27/S33, mitochondrial 6 89 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.04 Da
Charge 13.00
Isoelectric point 10.96
Molecular weight 10.70 kDa
Number of residues 93
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
23138during GO:0000080PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
16087during GO:0000084PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
23315during GO:0000085PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
15317during GO:0000087PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
940.9during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
12250during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
3.8during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
1.1during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi4600
conserved in eukaryotes4514
conserved in bacteria1000
conserved in metazoa3425
conserved in vertebrates3400
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPBC30D10.12c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC30D10.12c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC30D10.12c BioGRID Interaction Datasets
Expression Viewer SPBC30D10.12c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC30D10.12c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC30D10.12c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC30D10.12c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC30D10.12c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC30D10.12c Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC30D10.12c Cell Cycle Data
GEO SPBC30D10.12c GEO profiles
PInt SPBC30D10.12c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC30D10.12c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC30D10.12c Fission yeast phenotypic data & analysis
SPD / RIKEN03/03A10Orfeome Localization Data
UniProtKB/SwissProtO1435837S ribosomal protein S27, mitochondrial
ModBaseO14358Database of comparative protein structure models
STRINGO14358Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_596273mitochondrial ribosomal protein subunit S27 (predicted)
RefSeq mRNANM_001022194972h- mitochondrial ribosomal protein subunit S27 (predicted) (rsm27), mRNA
European Nucleotide ArchiveCAB10807.1ENA Protein Mapping
UniParcUPI000013A22CUniProt Archive

Literature for rsm27

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014