rsm27 (SPBC30D10.12c)

Gene Standard Namersm27 ChromosomeII
Systematic IDSPBC30D10.12c Gene Start3072290
Synonyms Gene End3074762
Productmitochondrial ribosomal protein subunit S27 (predicted) Gene Length2473
Feature Typeprotein coding CDS Start3072394
Name Description CDS End3072793
Characterisation Statusbiological_role_inferred CDS Length400

Ensembl Gene Location
  1. SPBC30D10.15
  2. SPBC30D10.14
  3. pdb1
  4. rsm27
  5. gpi1
  6. tor1
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002061inviable vegetative cell populationMicroscopyrsm27delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0003735structural constituent of ribosomeISSUniProtKB:P53305GO_REF:0000001
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006412translationISSUniProtKB:P53305GO_REF:0000001
GO:0032543mitochondrial translationNASGO_REF:0000051
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005739mitochondrionIDAPMID:16823372
GO:0005763mitochondrial small ribosomal subunitISSUniProtKB:P53305GO_REF:0000001
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
130722903072629
230726953072732
330727863074762

References

Region Start End Reference
three_prime_UTR30727943074762PMID:21511999
three_prime_UTR30727943074762PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF08293 IPR013219 Pfam Ribosomal protein S27/S33, mitochondrial 6 89 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.04 Da
Charge 13.00
Isoelectric point 10.96
Molecular weight 10.70 kDa
Number of residues 93
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide940.9PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1.1PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide3.8PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in bacteria
conserved in metazoa
conserved in vertebrates
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPBC30D10.12c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC30D10.12c Retrieval of eukaryotic orthologs
BioGrid SPBC30D10.12c BioGRID Interaction Datasets
Bähler Lab SPBC30D10.12c Cell Cycle Expression Profile
Bähler Lab SPBC30D10.12c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC30D10.12c Pheromone response/mating expression profiles
Bähler Lab SPBC30D10.12c Environmental stress expression profiles
Bähler Lab SPBC30D10.12c Bähler Lab Transcriptome Viewer
Cyclebase SPBC30D10.12c Cell Cycle Data
PInt SPBC30D10.12c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC30D10.12c Entrez Gene
WikiGene2540477mitochondrial ribosomal protein subunit S27
EntrezGene2540477mitochondrial ribosomal protein subunit S27
SPD / RIKEN03/03A10Orfeome Localization Data
UniProtKB/SwissProtO14358Uncharacterized protein C30D10.12c
ModBaseO14358Database of comparative protein structure models
Pfam Protein DomainsO14358Pfam Domain Arrangement
RefSeq PeptideNP_596273mitochondrial ribosomal protein subunit S27
RefSeq mRNANM_001022194972h- mitochondrial ribosomal protein subunit S27 (rsm27), mRNA
European Nucleotide ArchiveCAB10807ENA Protein Mapping
UniParcUPI000013A22CUniProt Archive

Literature for rsm27
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013