rsm27 (SPBC30D10.12c)


Gene Standard Namersm27 Characterisation Statusbiological role inferred
Systematic IDSPBC30D10.12c Feature Typeprotein coding
Synonyms Name Description
Productmitochondrial ribosomal protein subunit S27 (predicted) Product Size93aa, 10.70 kDa
Genomic Location Chromosome II, 3072290-3074762 (2473nt); CDS:3072394-3072793 (400nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome257
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
mitochondrial translation148
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
mitochondrial small ribosomal subunit32
Annotation ExtensionEvidenceWith/FromReference
mitochondrion752
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Inviable

Population Phenotype

Term NameGenotypesCount
inviable vegetative cell populationrsm27Δ1455

Cell Phenotype

Term NameGenotypesCount
inviable tapered vegetative cellrsm27Δ135
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons3072290..3072629, 3072695..3072732, 3072786..3074762
Intron3072630..3072694, 3072733..3072785
mRNA3072290..3074762
5' UTR3072290..3072393AU007689
CDS3072394..3072629, 3072695..3072732, 3072786..3072793
3' UTR3072794..3074762PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF08293 Pfam IPR013219 Ribosomal protein S27/S33, mitochondrial 7 89 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.04 Da
Charge 13.00
Codon Adaptation Index 0.28
Isoelectric point 10.96
Molecular weight 10.70 kDa
Number of residues 93
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for rsm27 (SPBC30D10.12c)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
23138during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
16087during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
23315during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
15317during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
12250during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
940.9during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
3.8during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
1.1during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3093
conserved in fungi4607
conserved in eukaryotes4517
conserved in bacteria1005
conserved in metazoa3427
conserved in vertebrates3402
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPBC30D10.12c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC30D10.12c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC30D10.12c BioGRID Interaction Datasets
Expression Viewer SPBC30D10.12c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC30D10.12c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC30D10.12c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC30D10.12c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC30D10.12c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC30D10.12c Transcriptome Viewer (Bähler Lab)
GEO SPBC30D10.12c GEO profiles
PInt SPBC30D10.12c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC30D10.12c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC30D10.12c Fission yeast phenotypic data & analysis
Cyclebase SPBC30D10.12c.1 Cell Cycle Data
SPD / RIKEN03/03A10Orfeome Localization Data
UniProtKB/SwissProtO1435837S ribosomal protein S27, mitochondrial
ModBaseO14358Database of comparative protein structure models
STRINGO14358Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_596273mitochondrial ribosomal protein subunit S27 (predicted)
RefSeq mRNANM_001022194972h- mitochondrial ribosomal protein subunit S27 (predicted) (rsm27), mRNA
European Nucleotide ArchiveCAB10807.1ENA Protein Mapping
UniParcUPI000013A22CUniProt Archive

Literature for rsm27

Search: Europe PMC or PubMed

Release Version: PomBase:30_61 - 12 Sep 2016