rsm27 (SPBC30D10.12c)


Gene Standard Namersm27 Characterisation Statusbiological_role_inferred
Systematic IDSPBC30D10.12c Feature Typeprotein coding
Synonyms Name Description
Productmitochondrial ribosomal protein subunit S27 (predicted) Product Size93aa, 10.70 kDa
Genomic Location Chromosome II, 3072290-3074762 (2473nt); CDS:3072394-3072793 (400nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0003735structural constituent of ribosomeISSUniProtKB:P53305GO_REF:0000001255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0032543mitochondrial translationNASGO_REF:0000051143
GO:0006412translationISSUniProtKB:P53305GO_REF:0000001597
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005763mitochondrial small ribosomal subunitISSUniProtKB:P53305GO_REF:000000132
GO:0005739mitochondrionIDAPMID:16823372758
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002061inviable vegetative cell populationMicroscopyrsm27ΔNullPECO:0000005, PECO:0000137PMID:236978061331
Microscopyrsm27ΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002111inviable tapered vegetative cell134
penetrance FYPO_EXT:0000001Microscopyrsm27ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
130722903072629
230726953072732
330727863074762

UTRs

Region Coordinates Reference
three_prime_UTR3072794..3074762PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF08293 Pfam IPR013219 Ribosomal protein S27/S33, mitochondrial 6 89 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.04 Da
Charge 13.00
Isoelectric point 10.96
Molecular weight 10.70 kDa
Number of residues 93
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
23138during GO:0000080PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
16087during GO:0000084PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
23315during GO:0000085PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
15317during GO:0000087PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
12250during GO:0072690PECO:0000005,
PECO:0000126
mass spectrometry evidencePMID:24763107
940.9during GO:0072690PECO:0000014,
PECO:0000005
experimental evidencePMID:23101633
NDduring cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
PECO:0000127,
PECO:0000005
experimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
3.8during GO:0072690PECO:0000014,
PECO:0000005
experimental evidencePMID:23101633
1.1during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000014,
PECO:0000127,
PECO:0000005
experimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3080
conserved in fungi4569
conserved in eukaryotes4482
conserved in bacteria1001
conserved in metazoa3419
conserved in vertebrates3393
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPBC30D10.12c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC30D10.12c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC30D10.12c BioGRID Interaction Datasets
Expression Viewer SPBC30D10.12c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC30D10.12c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC30D10.12c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC30D10.12c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC30D10.12c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC30D10.12c Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC30D10.12c Cell Cycle Data
GEO SPBC30D10.12c GEO profiles
PInt SPBC30D10.12c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC30D10.12c Peptides identified in tandem mass spectrometry proteomics experiments
WikiGene2540477mitochondrial ribosomal protein subunit S27
EntrezGene2540477mitochondrial ribosomal protein subunit S27
SPD / RIKEN03/03A10Orfeome Localization Data
UniProtKB/SwissProtO1435837S ribosomal protein S27, mitochondrial
ModBaseO14358Database of comparative protein structure models
STRINGO14358Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_596273mitochondrial ribosomal protein subunit S27
RefSeq mRNANM_001022194972h- mitochondrial ribosomal protein subunit S27 (rsm27), mRNA
European Nucleotide ArchiveCAB10807ENA Protein Mapping
European Nucleotide ArchiveCAB10807.1ENA Protein Mapping
UniParcUPI000013A22CUniProt Archive

Literature for rsm27

Search: Europe PMC or PubMed

Release Version: PomBase:22_45 - 08 Aug 2014