sfc3 (SPBC336.07)

Gene Standard Namesfc3 Characterisation Statuspublished
Systematic IDSPBC336.07 Feature Typeprotein coding
Synonyms Name Description
Producttranscription factor TFIIIC complex B box binding subunit Sfc3 Product Size1339aa, 153.64 kDa
Genomic Location Chromosome II, 2750876-2755161 (4286nt); CDS:2750915-2754934 (4020nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
chromatin insulator sequence binding4
Annotation ExtensionEvidenceWith/FromReference
transcription factor activity, core RNA polymerase III binding7
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
mitotic chromosome arm chromatin condensation1
Annotation ExtensionEvidenceWith/FromReference
transcription initiation from RNA polymerase III promoter10
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
nuclear envelope130
Annotation ExtensionEvidenceWith/FromReference
Annotation ExtensionEvidenceWith/FromReference
transcription factor TFIIIC complex6
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Inviable

Population Phenotype

Term NameGenotypesCount
inviable vegetative cell populationsfc3Δ1455

Cell Phenotype

Term NameGenotypesCount
decreased protein localization to chromatin at tRNA genes3
affects localization of sfc6sfc3-1
affects localization of rpc25sfc3-1
inviable vegetative cell, abnormal cell shape, normal cell sizesfc3Δ199
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
5' UTR2750876..2750914PMID:21511999
3' UTR2754935..2755161PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF04182 Pfam IPR007309 B-block binding subunit of TFIIIC 120 187 1
PTHR15180 HMMPANTHER 344 612 1
PTHR15180 HMMPANTHER 1 323 1

View domain organization at Pfam

Term IDTerm NameReferenceCount
PBO:0002147AT hook proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0002147

Protein Properties

Ave. residue weight 114.74 Da
Charge 19.50
Codon Adaptation Index 0.40
Isoelectric point 8.22
Molecular weight 153.64 kDa
Number of residues 1339
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for sfc3 (SPBC336.07)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1937during GO:0000080PECO:0000005,
single cellmass spectrometry evidencePMID:24763107
2035during GO:0000084PECO:0000005,
single cellmass spectrometry evidencePMID:24763107
1393during GO:0000085PECO:0000005,
single cellmass spectrometry evidencePMID:24763107
2091during GO:0000087PECO:0000005,
single cellmass spectrometry evidencePMID:24763107
1718during GO:0072690PECO:0000005,
single cellmass spectrometry evidencePMID:24763107

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.2during GO:0072690PECO:0000014,
population wideexperimental evidencePMID:23101633
0.63during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
predominantly single copy (one to one)3093
conserved in fungi4607
conserved in eukaryotes4517
conserved in metazoa3427
conserved in vertebrates3402
conserved in eukaryotes only2502

Manually curated orthologous groups


Orthologs in Compara

Physical Interactions

Source: BioGRID

Load genes that interact physically with SPBC336.07 into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured byclp1Cdc14-related protein phosphatase Clp1/Flp1 Affinity Capture-MSPMID:23297348
affinity captured bycbf11CBF1/Su(H)/LAG-1 family transcription factor Cbf11 Affinity Capture-MSPMID:22540037
affinity capturessfc6transcription factor TFIIIC complex subunit Sfc6 Affinity Capture-WesternPMID:10906331
affinity capturessfc1transcription factor TFIIIC complex A box associated subunit Sfc1 Affinity Capture-WesternPMID:10906331
affinity capturessfc4transcription factor TFIIIC complex subunit Sfc4 Affinity Capture-WesternPMID:10906331
Genetic Interactions

Source: BioGRID

Load genes that interact genetically with SPBC336.07 into the Query Builder
View these interactions in esyN

Gene Product Evidence Reference
synthetically rescuescut3condensin complex SMC subunit Smc4 Synthetic RescuePMID:21633354
synthetic growth defect withswd22mRNA cleavage and polyadenylation specificity factor complex subunit, WD repeat protein Swd22 Synthetic Growth DefectPMID:24945319
enhances phenotype ofcut3condensin complex SMC subunit Smc4 Phenotypic EnhancementPMID:19910488
External References
Database Identifier Description
NBRP SPBC336.07 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC336.07 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC336.07 BioGRID Interaction Datasets
Expression Viewer SPBC336.07 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC336.07 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC336.07 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC336.07 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC336.07 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC336.07 Transcriptome Viewer (Bähler Lab)
GEO SPBC336.07 GEO profiles
PInt SPBC336.07 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC336.07 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC336.07 Fission yeast phenotypic data & analysis
Cyclebase SPBC336.07.1 Cell Cycle Data
SPD / RIKEN48/48F10Orfeome Localization Data
UniProtKB/SwissProtQ9UST7Transcription factor tau subunit sfc3
ModBaseQ9UST7Database of comparative protein structure models
STRINGQ9UST7Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_596127transcription factor TFIIIC complex B box binding subunit Sfc3
RefSeq mRNANM_001022045972h- transcription factor TFIIIC complex B box binding subunit Sfc3 (sfc3), mRNA
European Nucleotide ArchiveCAB58159.1ENA Protein Mapping
UniParcUPI0000069A03UniProt Archive

Literature for sfc3

Search: Europe PMC or PubMed

Release Version: PomBase:30_61 - 12 Sep 2016