rrn7 (SPBC336.09c)

Gene Standard Namerrn7 ChromosomeII
Systematic IDSPBC336.09c Gene Start2758582
Synonyms Gene End2756276
ProductRNA polymerase I core factor complex subunit Rrn7 Gene Length2307
Feature Typeprotein coding CDS Start2757982
Name Description CDS End2756305
Characterisation Statuspublished CDS Length1678

Ensembl Gene Location
  1. rnh1
  2. SPNCRNA.1546
  3. sfc3
  4. spc24
  5. rrn7
  6. tif512
  7. vps52
  8. cdc10
  9. SPBC336.13c
  10. SPNCRNA.1547
  11. SPNCRNA.1548
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002061inviable vegetative cell populationMicroscopyrrn7delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0003677DNA bindingIEAUniProtKB:KW-0238GO_REF:0000037
GO:0005515protein bindingIPIrrn11PMID:12095692
GO:0046872metal ion bindingIEAUniProtKB:KW-0479GO_REF:0000037
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006355regulation of transcription, DNA-dependentIEAUniProtKB:KW-0805GO_REF:0000037
GO:0006360transcription from RNA polymerase I promoterIDAPMID:12095692
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0000120RNA polymerase I transcription factor complexIDAPMID:12095692
GO:0005634nucleusIDAPMID:16823372
GO:0005829cytosolIDAPMID:16823372
GO:0070860RNA polymerase I core factor complexISOSGD:S000003562GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
127585822757872
227578072756276

References

Region Start End Reference
five_prime_UTR27585822757983PMID:21511999
three_prime_UTR27563042756276PMID:21511999
three_prime_UTR27563042756276PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF11781 IPR021752 Pfam Transcription initiation factor Rrn7 4 37 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 115.29 Da
Charge -0.50
Isoelectric point 6.45
Molecular weight 61.91 kDa
Number of residues 537
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide74.94PMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1.2PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.56PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi only
conserved in fungi
conserved in eukaryotes
Manually curated orthologous groups
SpeciesGeneDescription

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Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
rrn11RNA polymerase I transcription factor subunit Rrn11 (predicted) Co-fractionationPMID:12095692
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External References
Database Identifier Description
NBRP SPBC336.09c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC336.09c Retrieval of eukaryotic orthologs
BioGrid SPBC336.09c BioGRID Interaction Datasets
Bähler Lab SPBC336.09c Cell Cycle Expression Profile
Bähler Lab SPBC336.09c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC336.09c Pheromone response/mating expression profiles
Bähler Lab SPBC336.09c Environmental stress expression profiles
Bähler Lab SPBC336.09c Bähler Lab Transcriptome Viewer
Cyclebase SPBC336.09c Cell Cycle Data
PInt SPBC336.09c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC336.09c Entrez Gene
WikiGene2540236RNA polymerase I upstream activation factor complex subunit Rrn7
Uniprot_genenameRRN7
EntrezGene2540236RNA polymerase I upstream activation factor complex subunit Rrn7
SPD / RIKEN35/35B03Orfeome Localization Data
UniProtKB/SwissProtQ9UST5RNA polymerase I-specific transcription initiation factor rrn7
ModBaseQ9UST5Database of comparative protein structure models
Pfam Protein DomainsQ9UST5Pfam Domain Arrangement
RefSeq PeptideNP_596129RNA polymerase I upstream activation factor complex subunit Rrn7
RefSeq mRNANM_001022047972h- RNA polymerase I upstream activation factor complex subunit Rrn7 (rrn7), mRNA
European Nucleotide ArchiveCAB58161ENA Protein Mapping
UniParcUPI0000134A5AUniProt Archive

Literature for rrn7
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Release Version: PomBase:18_35 - 11 May 2013