spo9 (SPBC36.06c)


Gene Standard Namespo9 Characterisation Statuspublished
Systematic IDSPBC36.06c Feature Typeprotein coding
Synonyms Name Description
Productfarnesyl pyrophosphate synthetase Product Size351aa, 40.95 kDa
Genomic Location Chromosome II, 853592-851808 (1785nt); CDS:853237-852025 (1213nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
farnesyltranstransferase activity3
Annotation ExtensionEvidenceWith/FromReference
geranyltranstransferase activity2
Annotation ExtensionEvidenceWith/FromReference
metal ion binding746
Annotation ExtensionEvidenceWith/FromReference
protein binding851
Annotation ExtensionEvidenceWith/FromReference
protein farnesyltransferase activity4
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
ascospore formation75
Annotation ExtensionEvidenceWith/FromReference
carotenoid biosynthetic process1
Annotation ExtensionEvidenceWith/FromReference
farnesyl diphosphate biosynthetic process4
Annotation ExtensionEvidenceWith/FromReference
geranyl diphosphate biosynthetic process2
Annotation ExtensionEvidenceWith/FromReference
geranylgeranyl diphosphate biosynthetic process1
Annotation ExtensionEvidenceWith/FromReference
protein prenylation7
Annotation ExtensionEvidenceWith/FromReference
protein targeting to plasma membrane7
Annotation ExtensionEvidenceWith/FromReference
steroid metabolic process47
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2316
Annotation ExtensionEvidenceWith/FromReference
nucleus2697
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term NameAlleleExpressionCount
decreased cell population growth at high temperaturespo9ΔNull152
normal growth on glucose carbon sourcespo9ΔNull194
sensitive to clotrimazolespo9ΔNull105
sensitive to micafunginspo9ΔNull116
sensitive to pravastatinspo9ΔNull2
sensitive to terbinafinespo9ΔNull102
spo9ΔNull
sensitive to thiabendazolespo9ΔNull191
slow vegetative cell population growthspo9ΔNull318
viable vegetative cell populationspo9ΔNull3783
unnamed (unrecorded)

Cell Phenotype

Term NameAlleleExpressionCount
GGPP absent from cellspo9ΔNull1
increased cellular ergosterol levelspo9ΔNull4
increased cellular squalene levelspo9ΔNull1
inviable cell at high temperaturespo9ΔNull22
normal cellular FPP levelspo9ΔNull1
viable vegetative cellspo9ΔNull3615
viable vegetative cell with normal cell morphologyspo9ΔNull3092
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1853592853103
2853053852916
3852847852647
4852606851808

UTRs

Region Coordinates Reference
five_prime_UTR853592..853238PMID:21511999
three_prime_UTR852024..851808PMID:21511999
exon853237..853103,853053..852916,852847..852647,852606..852025
intron852646..852607
mRNA853592..851808
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00348 Pfam IPR000092 Polyprenyl synthetase 49 311 3
PS00444 Prosite Patterns IPR000092 Polyprenyl synthetase 231 243 3
PS00723 Prosite Patterns IPR000092 Polyprenyl synthetase 97 111 3
PTHR11525 HMMPANTHER 11 351 2
1.10.600.10 Gene3D IPR008949 Isoprenoid synthase domain 13 350 5
SSF48576 SuperFamily IPR008949 Isoprenoid synthase domain 13 350 5

View domain organization at Pfam

Protein Properties

Ave. residue weight 116.66 Da
Charge -5.50
Isoelectric point 5.07
Molecular weight 40.95 kDa
Number of residues 351
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1118during GO:0000080PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
956during GO:0000085PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
783during GO:0072690PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
475.63during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.1during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
0.25during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi4604
conserved in eukaryotes4516
conserved in metazoa3432
conserved in vertebrates3407
conserved in eukaryotes only2503
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
binds DNA-binding domain construct withfps1geranyltranstransferase Fps1 Two-hybridPMID:17596513
binds activation domain construct withfps1geranyltranstransferase Fps1 Two-hybridPMID:17596513
affinity captured byfps1geranyltranstransferase Fps1 Affinity Capture-WesternPMID:17596513
binds activation domain construct withspo9farnesyl pyrophosphate synthetase Two-hybridPMID:17596513
Genetic Interactions

Source: BioGRID

View these interactions in esyN

Gene Product Evidence Reference
overexpression rescuescpp1protein farnesyltransferase beta subunit Cpp1 Dosage RescuePMID:16624901
rescued by overexpression offps1geranyltranstransferase Fps1 Dosage RescuePMID:17596513
overexpression rescuestsc2tuberin Dosage RescuePMID:16624901
negative genetic interaction withxap5xap-5-like protein Negative GeneticPMID:24957674
External References
Database Identifier Description
NBRP SPBC36.06c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC36.06c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC36.06c BioGRID Interaction Datasets
Expression Viewer SPBC36.06c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC36.06c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC36.06c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC36.06c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC36.06c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC36.06c Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC36.06c Cell Cycle Data
GEO SPBC36.06c GEO profiles
PInt SPBC36.06c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC36.06c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC36.06c Fission yeast phenotypic data & analysis
IntEnz2.5.1.1Integrated relational Enzyme database
Rhea2.5.1.1Annotated reactions database
SPD / RIKEN22/22B05Orfeome Localization Data
UniProtKB/SwissProtO59703Geranylgeranyl pyrophosphate synthase
ModBaseO59703Database of comparative protein structure models
STRINGO59703Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_595334farnesyl pyrophosphate synthetase
RefSeq mRNANM_001021242972h- farnesyl pyrophosphate synthetase (spo9), mRNA
European Nucleotide ArchiveCAA19054.1ENA Protein Mapping
UniParcUPI000006AA57UniProt Archive

Literature for spo9

Search: Europe PMC or PubMed

Release Version: PomBase:25_49 - 02 Feb 2015