uge1 (SPBC365.14c)


Gene Standard Nameuge1 Characterisation Statuspublished
Systematic IDSPBC365.14c Feature Typeprotein coding
Synonymsgal10 Name Description
ProductUDP-glucose 4-epimerase Uge1 Product Size355aa, 39.23 kDa
Genomic Location Chromosome II, 2523067-2521123 (1945nt); CDS:2522925-2521623 (1303nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
UDP-glucose 4-epimerase activity2
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
galactose catabolic process via UDP-galactose3
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2307
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Single-allele Phenotypes

Population Phenotype

Term NameGenotypesCount
decreased mating efficiencyuge1Δ252
sensitive to 4-nitroquinoline N-oxideuge1Δ159
sensitive to 5-fluorouraciluge1Δ272
sensitive to camptothecinuge1Δ225
sensitive to clotrimazoleuge1Δ107
sensitive to cobaltuge1Δ57
sensitive to micafunginuge1Δ116
sensitive to tacrolimusuge1Δ81
sensitive to terbinafineuge1Δ102
sensitive to thiabendazoleuge1Δ241
slow vegetative cell population growthuge1Δ332
viable vegetative cell populationuge1Δ3819

Cell Phenotype

Term NameGenotypesCount
inviable stubby vegetative celluge1Δ17
viable stubby vegetative celluge1Δ73
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons2523067..2522923, 2522855..2522793, 2522624..2521123
Intron2522922..2522856, 2522792..2522625
mRNA2523067..2521123
5' UTR2523067..2522926PMID:21511999
CDS2522925..2522923, 2522855..2522793, 2522624..2521623
3' UTR2521622..2521123PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF16363 Pfam IPR016040 NAD(P)-binding domain 10 334 3
PTHR10366:SF433 HMMPANTHER 8 346 2
PTHR10366 HMMPANTHER 8 346 7
3.90.25.10 Gene3D RmlD-like substrate binding domain 189 241 3
3.90.25.10 Gene3D RmlD-like substrate binding domain 274 346 3
3.40.50.720 Gene3D L-threonine 3-dehydrogenase 5 188 100
SSF51735 SuperFamily IPR016040 NAD(P)-binding domain 7 344 88
TIGR01179 tigrfam IPR005886 UDP-glucose 4-epimerase GalE 9 343 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 110.52 Da
Charge 3.50
Isoelectric point 7.08
Molecular weight 39.23 kDa
Number of residues 355
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
88741during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
87425during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
81624during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
84229during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
87471during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
34980.4during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
24438.12during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
9.4during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
2.3during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3090
conserved in fungi4604
conserved in eukaryotes4514
conserved in bacteria1000
conserved in metazoa3421
conserved in vertebrates3396
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Load gene that interact geneitically with SPBC365.14c into the Query Builder
View these interactions in esyN

Gene Product Evidence Reference
negative genetic interaction withphp3CCAAT-binding factor complex subunit Php3 Negative GeneticPMID:22681890
negative genetic interaction withdot2ESCRT II complex subunit Dot2 Negative GeneticPMID:22681890
negative genetic interaction withsck2serine/threonine protein kinase Sck2 Negative GeneticPMID:24463365
negative genetic interaction withint6eIF3e subunit Int6 Negative GeneticPMID:22681890
negative genetic interaction withvps17retromer complex subunit Vps17 Negative GeneticPMID:22681890
negative genetic interaction withvps5retromer complex subunit Vps5 Negative GeneticPMID:22681890
negative genetic interaction withhif2Set3 complex subunit Hif2 Negative GeneticPMID:22681890
negative genetic interaction withatg6autophagy associated beclin family protein Atg6 Negative GeneticPMID:22681890
negative genetic interaction withtps1alpha,alpha-trehalose-phosphate synthase [UDP-forming] Negative GeneticPMID:22681890
negative genetic interaction withptc1protein phosphatase 2C Ptc1 Negative GeneticPMID:22681890
negative genetic interaction withprp4serine/threonine protein kinase Prp4 Negative GeneticPMID:22681890
negative genetic interaction withres1MBF transcription factor complex subunit Res1 Negative GeneticPMID:22681890
negative genetic interaction withSPAC2F3.11exopolyphosphatase (predicted) Negative GeneticPMID:22681890
negative genetic interaction withypa2protein phosphatase type 2A regulator, PTPA family Ypa2 Negative GeneticPMID:22681890
negative genetic interaction withpyp2tyrosine phosphatase Pyp2 Negative GeneticPMID:22681890
negative genetic interaction withxap5xap-5-like protein Negative GeneticPMID:24957674
negative genetic interaction withmpr1histidine-containing response regulator phosphotransferase Mpr1 Negative GeneticPMID:22681890
positive genetic interaction withsts5RNB-like protein Positive GeneticPMID:22681890
positive genetic interaction withlub1WD repeat protein Lub1 Positive GeneticPMID:22681890
synthetic growth defect withdis2serine/threonine protein phosphatase PP1 subfamily, Dis2 Synthetic Growth DefectPMID:21965289
synthetic growth defect withght2hexose transmembrane transporter Ght2 Synthetic Growth DefectPMID:23254763
External References
Database Identifier Description
NBRP SPBC365.14c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC365.14c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC365.14c BioGRID Interaction Datasets
Expression Viewer SPBC365.14c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC365.14c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC365.14c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC365.14c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC365.14c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC365.14c Transcriptome Viewer (Bähler Lab)
GEO SPBC365.14c GEO profiles
PInt SPBC365.14c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC365.14c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC365.14c Fission yeast phenotypic data & analysis
Cyclebase SPBC365.14c.1 Cell Cycle Data
SPD / RIKEN22/22F08Orfeome Localization Data
UniProtKB/SwissProtQ9Y7X5UDP-glucose 4-epimerase uge1
ModBaseQ9Y7X5Database of comparative protein structure models
STRINGQ9Y7X5Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_596043UDP-glucose 4-epimerase Uge1
RefSeq mRNANM_001021953972h- UDP-glucose 4-epimerase Uge1 (uge1), mRNA
European Nucleotide ArchiveCU329671ENA EMBL mapping
European Nucleotide ArchiveCAB44766ENA Protein Mapping
European Nucleotide ArchiveCAB44766.1ENA Protein Mapping
MetaCycPWY-3821Galactose degradation III
MetaCycPWY-6317Galactose degradation I (Leloir pathway)
MetaCycPWY-6397Mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
MetaCycPWY-6527Stachyose degradation
MetaCycPWY-7328Superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
MetaCycPWY-7344UDP-D-galactose biosynthesis
KEGG00052+5.1.3.2Galactose metabolism
KEGG00520+5.1.3.2Amino sugar and nucleotide sugar metabolism
UniParcUPI0000069D49UniProt Archive
UniPathwayUPA00214Carbohydrate metabolism; galactose metabolism

Literature for uge1

Search: Europe PMC or PubMed

Release Version: PomBase:29_56 - 12 Nov 2015