rrn6 (SPBC3B8.11)

Gene Standard Namerrn6 ChromosomeII
Systematic IDSPBC3B8.11 Gene Start3372308
Synonyms Gene End3369297
ProductRNA polymerase I transcription factor subunit Rrn6 (predicted) Gene Length3012
Feature Typeprotein coding CDS Start3372184
Name Description CDS End3369578
Characterisation Statusbiological_role_inferred CDS Length2607

Ensembl Gene Location
  1. srp1
  2. rpl502
  3. SPBC11C11.10
  4. SPBC11C11.11c
  5. rrn6
  6. nem1
  7. SPBC3B8.09
  8. SPBC3B8.08
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0001489inviable vegetative cellMicroscopyrrn6delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0001169RNA polymerase I CORE element sequence-specific DNA binding transcription factor activityISOSGD:S000000110GO_REF:0000024
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006360transcription from RNA polymerase I promoterISOSGD:S000000110GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005829cytosolIDAPMID:16823372
GO:0070860RNA polymerase I core factor complexISOSGD:S000000110GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
133723083369297

References

Region Start End Reference
three_prime_UTR33695773369297PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF10214 IPR019350 Pfam RNA polymerase I-specific transcription initiation factor RRN6-like 127 868 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.18 Da
Charge -24.00
Isoelectric point 4.78
Molecular weight 98.24 kDa
Number of residues 868
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide454.08PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide1.5PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.49PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi only
conserved in fungi
conserved in eukaryotes
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPBC3B8.11 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC3B8.11 Retrieval of eukaryotic orthologs
BioGrid SPBC3B8.11 BioGRID Interaction Datasets
Bähler Lab SPBC3B8.11 Cell Cycle Expression Profile
Bähler Lab SPBC3B8.11 Meiosis/Sporulation Expression Profies
Bähler Lab SPBC3B8.11 Pheromone response/mating expression profiles
Bähler Lab SPBC3B8.11 Environmental stress expression profiles
Bähler Lab SPBC3B8.11 Bähler Lab Transcriptome Viewer
Cyclebase SPBC3B8.11 Cell Cycle Data
PInt SPBC3B8.11 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC3B8.11 Entrez Gene
WikiGene2540951RNA polymerase I transcription factor subunit Rrn6 (predicted)
EntrezGene2540951RNA polymerase I transcription factor subunit Rrn6 (predicted)
SPD / RIKEN38/38F05Orfeome Localization Data
UniProtKB/SwissProtO59719Uncharacterized protein C3B8.11
ModBaseO59719Database of comparative protein structure models
Pfam Protein DomainsO59719Pfam Domain Arrangement
RefSeq PeptideNP_596403RNA polymerase I transcription factor subunit Rrn6 (predicted)
RefSeq mRNANM_001022322972h- RNA polymerase I transcription factor subunit Rrn6 (predicted) (rrn6), mRNA
European Nucleotide ArchiveCAA18300ENA Protein Mapping
SPD / RIKEN38/38F05Orfeome Localization Data

Literature for rrn6
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Search: UK PMC or PubMed

Release Version: PomBase:18.34 - 04 Apr 2013