rpl3602 (SPBC405.07)


Gene Standard Namerpl3602 Characterisation Statuspublished
Systematic IDSPBC405.07 Feature Typeprotein coding
Synonymsrpl36, rpl36-2 Name Description
Product60S ribosomal protein L36 Product Size99aa, 11.26 kDa
Genomic Location Chromosome II, 3153441-3154041 (601nt); CDS:3153502-3153876 (375nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome255
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation465
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2314
Annotation ExtensionEvidenceWith/FromReference
cytosolic large ribosomal subunit83
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term NameAlleleExpressionCount
viable vegetative cell populationrpl3602ΔNull3809

Cell Phenotype

Term NameAlleleExpressionCount
viable vegetative cell with normal cell morphologyrpl3602ΔNull3094
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons3153441..3153723, 3153799..3154041
mRNA3153441..3154041
5' UTR3153441..3153501PMID:21511999
CDS3153502..3153723, 3153799..3153876
3' UTR3153877..3154041PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01158 Pfam IPR000509 Ribosomal protein L36e 4 96 2
PS01190 Prosite Patterns IPR000509 Ribosomal protein L36e 50 60 2
PTHR10114 HMMPANTHER IPR000509 Ribosomal protein L36e 1 99 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.72 Da
Charge 21.00
Isoelectric point 12.36
Molecular weight 11.26 kDa
Number of residues 99
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serine 1672
present during mitotic M phaseS94
present during mitotic M phaseS95
Annotation ExtensionEvidenceResidueReference
present during mitotic M phase experimental evidence S94 PMID:21712547
present during mitotic M phase experimental evidence S95 PMID:21712547
phosphorylated residue 1927
Annotation ExtensionEvidenceResidueReference
IDA PMID:19547744
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
370032during GO:0000080PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
366683during GO:0000084PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
362168during GO:0000085PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
348747during GO:0000087PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
373473during GO:0072690PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
63181.48during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
2585.31during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
57during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
6.8during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4603
conserved in eukaryotes4514
conserved in metazoa3424
conserved in vertebrates3399
conserved in eukaryotes only2501
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bynak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
affinity captured bypab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
affinity captured bysog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
affinity captured bytea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
Genetic Interactions

Source: BioGRID

View these interactions in esyN

Gene Product Evidence Reference
rescuescdc42Rho family GTPase Cdc42 Phenotypic SuppressionPMID:10628977
External References
Database Identifier Description
NBRP SPBC405.07 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC405.07 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC405.07 BioGRID Interaction Datasets
Expression Viewer SPBC405.07 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC405.07 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC405.07 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC405.07 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC405.07 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC405.07 Transcriptome Viewer (Bähler Lab)
GEO SPBC405.07 GEO profiles
PInt SPBC405.07 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC405.07 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC405.07 Fission yeast phenotypic data & analysis
Cyclebase SPBC405.07.1 Cell Cycle Data
SPD / RIKEN31/31C11Orfeome Localization Data
UniProtKB/SwissProtO9465860S ribosomal protein L36-B
ModBaseO94658Database of comparative protein structure models
STRINGO94658Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59631060S ribosomal protein L36
RefSeq mRNANM_001022232972h- 60S ribosomal protein L36 (rpl3602), mRNA
European Nucleotide ArchiveCAB38606.1ENA Protein Mapping
UniParcUPI0000132FDFUniProt Archive

Literature for rpl3602

Search: Europe PMC or PubMed

Release Version: PomBase:26_52 - 11 May 2015