rpl3602 (SPBC405.07)


Gene Standard Namerpl3602 Characterisation Statuspublished
Systematic IDSPBC405.07 Feature Typeprotein coding
Synonymsrpl36, rpl36-2 Name Description
Product60S ribosomal protein L36 Product Size99aa, 11.26 kDa
Genomic Location Chromosome II, 3153441-3154041 (601nt); CDS:3153502-3153876 (375nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0003735structural constituent of ribosomeISOSGD:S000004807GO_REF:0000024255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0002181cytoplasmic translationISOSGD:S000004807GO_REF:0000024473
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005829cytosolIDAPMID:168233722315
GO:0022625cytosolic large ribosomal subunitISOSGD:S000004807GO_REF:000002483
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopyrpl3602ΔNullPMID:204732893759
Microscopyrpl3602ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3089
penetrance FYPO_EXT:0000001Microscopyrpl3602ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
131534413153723
231537993154041

UTRs

Region Coordinates Reference
five_prime_UTR3153441..3153501PMID:21511999
three_prime_UTR3153877..3154041PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01158 Pfam IPR000509 Ribosomal protein L36e 4 96 2
PS01190 Prosite Patterns IPR000509 Ribosomal protein L36e 50 60 2
PTHR10114 HMMPANTHER IPR000509 Ribosomal protein L36e 1 99 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 113.72 Da
Charge 21.00
Isoelectric point 12.36
Molecular weight 11.26 kDa
Number of residues 99
Modifications

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00046O-phospho-L-serineexperimental evidenceS95PMID:217125471670
present during mitotic M phase
present during mitotic M phaseexperimental evidenceS94PMID:21712547
MOD:00696phosphorylated residueNASPMID:195477441922
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
370032during GO:0000080PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
366683during GO:0000084PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
362168during GO:0000085PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
348747during GO:0000087PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
373473during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
63181.48during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
2585.31during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
57during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
6.8during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4600
conserved in eukaryotes4514
conserved in metazoa3425
conserved in vertebrates3400
conserved in eukaryotes only2497
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
cdc42Rho family GTPase Cdc42 Phenotypic SuppressionPMID:10628977
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
sog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
pab2poly(A) binding protein Pab2 Affinity Capture-MSPMID:19336419
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
External References
Database Identifier Description
NBRP SPBC405.07 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC405.07 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC405.07 BioGRID Interaction Datasets
Expression Viewer SPBC405.07 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC405.07 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC405.07 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC405.07 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC405.07 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC405.07 Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC405.07 Cell Cycle Data
GEO SPBC405.07 GEO profiles
PInt SPBC405.07 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC405.07 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC405.07 Fission yeast phenotypic data & analysis
SPD / RIKEN31/31C11Orfeome Localization Data
UniProtKB/SwissProtO9465860S ribosomal protein L36-B
ModBaseO94658Database of comparative protein structure models
STRINGO94658Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59631060S ribosomal protein L36
RefSeq mRNANM_001022232972h- 60S ribosomal protein L36 (rpl3602), mRNA
European Nucleotide ArchiveCAB38606.1ENA Protein Mapping
UniParcUPI0000132FDFUniProt Archive

Literature for rpl3602

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014