meu18 (SPBC409.11)


Gene Standard Namemeu18 Characterisation StatusSchizosaccharomyces specific protein, uncharacterized
Systematic IDSPBC409.11 Feature Typeprotein coding
Synonyms Name DescriptionMeiotic Expression Upregulated
ProductSchizosaccharomyces specific protein Meu18 Product Size553aa, 64.79 kDa
Genomic Location Chromosome II, 1158533-1160295 (1763nt); CDS:1158594-1160255 (1662nt)

Ensembl Gene Location
GO Cellular Component
Term NameCount
cytoplasm4211
Annotation ExtensionEvidenceWith/FromReference
nuclear envelope129
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
viable vegetative cell populationmeu18Δ3840

Cell Phenotype

Term NameGenotypesCount
normal meiosismeu18Δ149
viable vegetative cell with normal cell morphologymeu18Δ3100
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons1158533..1160295
mRNA1158533..1160295
5' UTR1158533..1158593PMID:18641648
5' UTR1158533..1158593PMID:20118936
CDS1158594..1160255
3' UTR1160256..1160295PMID:18641648
3' UTR1160256..1160295PMID:20118936
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
TMhelix TMHMM 21 43 953
Coil ncoils Predicted coiled-coil protein (DUF2205) 441 461 1057

View domain organization at Pfam

Term IDTerm NameReferenceCount
SO:0000418signal_peptide279
SO:0001528nuclear_localization_signal21
PMID:11376151

Protein Properties

Ave. residue weight 117.17 Da
Charge 10.00
Codon Adaptation Index 0.37
Isoelectric point 8.18
Molecular weight 64.79 kDa
Number of residues 553
Sequence
Gene Expression

Qualitative Gene Expression

DescriptionLevelEvidenceReference
RNA levelincreased during GO:0051321experimental evidencePMID:11376151
increased during GO:0051321experimental evidencePMID:16303567

Quantitative Gene Expression

View graphical display of gene expression data for meu18 (SPBC409.11)

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.3during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
0.36during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
Schizosaccharomyces specific225
Orthologs

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Load genes that interact genetically with SPBC409.11 into the Query Builder
View these interactions in esyN

Gene Product Evidence Reference
negative genetic interaction withxap5xap-5-like protein Negative GeneticPMID:24957674
negative genetic interaction withdsc1Golgi Dsc E3 ligase complex subunit Dsc1 Negative GeneticPMID:21504829
External References
Database Identifier Description
NBRP SPBC409.11 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC409.11 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC409.11 BioGRID Interaction Datasets
Expression Viewer SPBC409.11 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC409.11 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC409.11 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC409.11 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC409.11 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC409.11 Transcriptome Viewer (Bähler Lab)
GEO SPBC409.11 GEO profiles
PInt SPBC409.11 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC409.11 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC409.11 Fission yeast phenotypic data & analysis
Cyclebase SPBC409.11.1 Cell Cycle Data
SPD / RIKEN34/34G12Orfeome Localization Data
UniProtKB/SwissProtQ9UUB3Meiotic expression up-regulated protein 18
ModBaseQ9UUB3Database of comparative protein structure models
STRINGQ9UUB3Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_595461sequence orphan
RefSeq mRNANM_001021371972h- sequence orphan (meu18), mRNA

Literature for meu18

Search: Europe PMC or PubMed

Release Version: PomBase:30_59 - 12 Apr 2016