nup107 (SPBC428.01c)

Gene Standard Namenup107 ChromosomeII
Systematic IDSPBC428.01c Gene Start442078
SynonymsSPBC582.11c Gene End438999
Productnucleoporin Nup107 Gene Length3080
Feature Typeprotein coding CDS Start442032
Name Description CDS End439274
Characterisation Statuspublished CDS Length2759

Ensembl Gene Location
  1. SPBC582.08
  2. pex11
  3. SPBC582.10c
  4. SPNCRNA.1357
  5. nup107
  6. eca39
  7. SPNCRNA.1358
  8. SPNCRNA.1359
  9. pho4
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002061inviable vegetative cell populationnup107delta (deletion)deletionPMID:15116432
Microscopynup107delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0005515protein bindingIPInup131PMID:15226438
IPInup132PMID:15226438
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006407rRNA export from nucleusISOSGD:S000002274GO_REF:0000024
GO:0015031protein transportIEAUniProtKB:KW-0653GO_REF:0000037
GO:0016973poly(A)+ mRNA export from nucleusIMPPMID:15226438
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005643nuclear poreIDAPMID:15226438
exists_during mitotic cell cycleIDAPMID:20970342
exists_during meiotic cell cycleIDAPMID:20970342
GO:0005829cytosolIDAPMID:16823372
GO:0031080nuclear pore outer ringIDAPMID:15226438
GO:0031965nuclear membraneIDAPMID:15116432
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1442078441916
2441840441793
3441751441718
4441667441541
5441484441392
6441337441229
7441187438999

References

Region Start End Reference
three_prime_UTR439273438999PMID:21511999
five_prime_UTR442078442033PMID:21511999
three_prime_UTR439273438999PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF04121 IPR007252 Pfam Nuclear pore protein 84/107 120 800 1
PTHR13003 IPR007252 hmmpanther Nuclear pore protein 84/107 15 808 1
PTHR13003:SF2 hmmpanther 15 808 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.72 Da
Charge -34.50
Isoelectric point 4.60
Molecular weight 93.26 kDa
Number of residues 813
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1700.23PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide2354.86PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.89PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide3.9PMID:23101633
Warning
DescriptionQualifierReference
gene structure updated PMID:21511999
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
nup132nucleoporin Nup132 Affinity Capture-WesternPMID:15226438
nup131nucleoporin Nup131 Affinity Capture-WesternPMID:15226438
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External References
Database Identifier Description
NBRP SPBC428.01c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC428.01c Retrieval of eukaryotic orthologs
BioGrid SPBC428.01c BioGRID Interaction Datasets
Bähler Lab SPBC428.01c Cell Cycle Expression Profile
Bähler Lab SPBC428.01c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC428.01c Pheromone response/mating expression profiles
Bähler Lab SPBC428.01c Environmental stress expression profiles
Bähler Lab SPBC428.01c Bähler Lab Transcriptome Viewer
Cyclebase SPBC428.01c Cell Cycle Data
PInt SPBC428.01c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC428.01c Entrez Gene
EntrezGene3361255nucleoporin Nup107
Uniprot_genenameNUP107
WikiGene3361255nucleoporin Nup107
SPD / RIKEN38/38H03Orfeome Localization Data
UniProtKB/SwissProtQ10331Nucleoporin nup107
ModBaseQ10331Database of comparative protein structure models
Pfam Protein DomainsQ10331Pfam Domain Arrangement
RefSeq PeptideNP_001018780nucleoporin Nup107
RefSeq mRNANM_001021087972h- nucleoporin Nup107 (nup107), mRNA
European Nucleotide ArchiveCAE54931ENA Protein Mapping
UniParcUPI000228F4D1UniProt Archive

Literature for nup107
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013