SPBC428.15

Gene Standard NameUnassigned ChromosomeII
Systematic IDSPBC428.15 Gene Start472084
Synonyms Gene End473687
ProductObg-like ATPase (predicted) Gene Length1604
Feature Typeprotein coding CDS Start472210
Name Description CDS End473439
Characterisation Statusconserved_unknown CDS Length1230

Ensembl Gene Location
  1. SPBC428.11
  2. snu4
  3. SPBC428.12c
  4. SPBC428.14
  5. mob1
  6. SPNCRNA.1363
  7. SPBC428.15
  8. rhb1
  9. wpl1
  10. cdt1
  11. utp15
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPBC428.15delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0005524ATP bindingISSUniProtKB:Q9NTK5GO_REF:0000001
GO:0005525GTP bindingIEAUniProtKB:KW-0342GO_REF:0000037
GO:0016887ATPase activityISSUniProtKB:Q9NTK5GO_REF:0000001
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005737cytoplasmISOSGD:S000003442GO_REF:0000024
GO:0005829cytosolIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1472084473687

References

Region Start End Reference
three_prime_UTR473440473687PMID:21511999
five_prime_UTR472084472209PMID:21511999
three_prime_UTR473440473687PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF08438 IPR013646 Pfam GTPase of unknown function C-terminal 226 339 1
PF01926 IPR006073 Pfam GTP binding domain 7 122 12
G3DSA:3.40.50.300 Gene3D 221 280 279
G3DSA:3.40.50.300 Gene3D 6 153 279
SSF52540 SuperFamily 7 317 294
PR00326 IPR006073 PRINTS GTP binding domain 7 27 9
PR00326 IPR006073 PRINTS GTP binding domain 28 46 9
PR00326 IPR006073 PRINTS GTP binding domain 81 96 9
PR00326 IPR006073 PRINTS GTP binding domain 98 116 9
PTHR23305 hmmpanther 1 373 3
PTHR23305:SF1 hmmpanther 1 373 1

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000997GTP1/OBG familyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000997

Protein Properties

Ave. residue weight 108.71 Da
Charge 3.50
Isoelectric point 7.24
Molecular weight 44.46 kDa
Number of residues 409
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide9018.52PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide2140.94PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.52PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide2.3PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
Manually curated orthologous groups
SpeciesGeneDescription

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Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
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External References
Database Identifier Description
NBRP SPBC428.15 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC428.15 Retrieval of eukaryotic orthologs
BioGrid SPBC428.15 BioGRID Interaction Datasets
Bähler Lab SPBC428.15 Cell Cycle Expression Profile
Bähler Lab SPBC428.15 Meiosis/Sporulation Expression Profies
Bähler Lab SPBC428.15 Pheromone response/mating expression profiles
Bähler Lab SPBC428.15 Environmental stress expression profiles
Bähler Lab SPBC428.15 Bähler Lab Transcriptome Viewer
Cyclebase SPBC428.15 Cell Cycle Data
PInt SPBC428.15 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC428.15 Entrez Gene
SPD / RIKEN19/19F01Orfeome Localization Data
EntrezGene2540972GTP binding protein (predicted)
WikiGene2540972GTP binding protein (predicted)
UniProtKB/SwissProtO94362Uncharacterized GTP-binding protein C428.15
ModBaseO94362Database of comparative protein structure models
Pfam Protein DomainsO94362Pfam Domain Arrangement
RefSeq PeptideNP_595193GTP binding protein (predicted)
RefSeq mRNANM_001021100972h- GTP binding protein (predicted) (SPBC428.15), mRNA
European Nucleotide ArchiveCAA22290ENA Protein Mapping
UniParcUPI000006B77DUniProt Archive

Literature for SPBC428.15
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013