anc1 (SPBC530.10c)


Gene Standard Nameanc1 Characterisation Statuspublished
Systematic IDSPBC530.10c Feature Typeprotein coding
Synonyms Name DescriptionAdenine Nucleotide Carrier
Productmitochondrial adenine nucleotide carrier Anc1 Product Size322aa, 35.02 kDa
Genomic Location Chromosome II, 812897-811060 (1838nt); CDS:812381-811413 (969nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
ATP:ADP antiporter activity2
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
mitochondrial ATP transmembrane transport1
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
integral component of membrane966
Annotation ExtensionEvidenceWith/FromReference
mitochondrial inner membrane162
Annotation ExtensionEvidenceWith/FromReference
mitochondrion752
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
abolished cell population growth on glycerol carbon sourceanc1Δ68
abolished cell population growth on glycerol/ethanol carbon sourceanc1Δ7
abolished cell population growth on raffinose carbon sourceanc1Δ1
decreased anaerobic cell population growthanc1Δ3
decreased cell population growth on glucose carbon sourceanc1Δ380
decreased cell population growth on raffinose carbon sourceanc1Δ1
sensitive to antimycin Aanc1Δ6
viable vegetative cell populationanc1Δ3850

Cell Phenotype

Term NameGenotypesCount
inviable cell following anaerobic growthanc1Δ1
viable vegetative cell with normal cell morphologyanc1Δ3102
Target Of
OntologyRelationshipGeneProduct
GO substrate of sst2 human AMSH/STAMBP protein homolog, ubiquitin specific-protease
GO substrate of ubp15 ubiquitin C-terminal hydrolase Ubp15
GO substrate of ubp4 ubiquitin C-terminal hydrolase Ubp4
GO substrate of ubp5 ubiquitin C-terminal hydrolase Ubp5
GO substrate of ubp9 ubiquitin C-terminal hydrolase Ubp9
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons812897..811060
mRNA812897..811060
5' UTR812897..812382PMID:21511999
CDS812381..811413
3' UTR811412..811060AU009320
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00153 Pfam IPR018108 Mitochondrial substrate/solute carrier 231 319 24
PF00153 Pfam IPR018108 Mitochondrial substrate/solute carrier 130 222 24
PF00153 Pfam IPR018108 Mitochondrial substrate/solute carrier 25 121 24
TMhelix TMHMM 131 153 950
TMhelix TMHMM 231 253 950
TMhelix TMHMM 194 216 950
PS50920 Prosite Profiles IPR018108 Mitochondrial substrate/solute carrier 25 118 24
PS50920 Prosite Profiles IPR018108 Mitochondrial substrate/solute carrier 130 222 24
PS50920 Prosite Profiles IPR018108 Mitochondrial substrate/solute carrier 230 316 24
PTHR24089 HMMPANTHER 9 317 24
PTHR24089:SF386 HMMPANTHER 9 317 1
1okcA00 Gene3D IPR023395 Mitochondrial carrier domain 24 314 24
0048588 SuperFamily IPR023395 Mitochondrial carrier domain 25 313 24
PR00927 PRINTS IPR002113 Adenine nucleotide translocator 1 130 143 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator 1 27 39 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator 1 235 251 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator 1 104 116 1
PR00927 PRINTS IPR002113 Adenine nucleotide translocator 1 71 92 1
PR00926 PRINTS IPR002067 Mitochondrial carrier protein 145 163 11
PR00926 PRINTS IPR002067 Mitochondrial carrier protein 43 57 11
PR00926 PRINTS IPR002067 Mitochondrial carrier protein 30 43 11
PR00926 PRINTS IPR002067 Mitochondrial carrier protein 93 113 11
PR00926 PRINTS IPR002067 Mitochondrial carrier protein 195 213 11
PR00926 PRINTS IPR002067 Mitochondrial carrier protein 239 261 11

View domain organization at Pfam

Term IDTerm NameReferenceCount
PBO:0000409mitochondrial carrierTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000409

Protein Properties

Ave. residue weight 108.76 Da
Charge 21.50
Codon Adaptation Index 0.76
Isoelectric point 10.49
Molecular weight 35.02 kDa
Number of residues 322
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serineS288 2289
Annotation ExtensionEvidenceResidueReference
IDA S288 PMID:25720772
O-phospho-L-threonineT81 1085
Annotation ExtensionEvidenceResidueReference
IDA T81 PMID:25720772
O4'-phospho-L-tyrosineY101 281
Annotation ExtensionEvidenceResidueReference
IDA Y101 PMID:25720772
ubiquitinylated lysineK269 512
Annotation ExtensionEvidenceResidueReference
mass spectrometry evidence K269 PMID:26412298
IDA PMID:26412298
Sequence
Gene Expression

Qualitative Gene Expression

DescriptionLevelEvidenceReference
RNA levelincreased during GO:0006071Northern assay evidencePMID:10082789
decreased during GO:0071456Northern assay evidencePMID:10082789
present during GO:0072690Northern assay evidencePMID:10082789
increased during GO:0033530Northern assay evidencePMID:10082789

Quantitative Gene Expression

View graphical display of gene expression data for anc1 (SPBC530.10c)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
220040during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
227978during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
230907during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
228138during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
27770.59during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
229347during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
57822.9during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
48during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
8during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Complementation
DescriptionQualifierReference
functionally complements S. cerevisiae ANC1 and ANC2full PMID:8675018
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4607
conserved in eukaryotes4517
conserved in metazoa3427
conserved in vertebrates3402
conserved in eukaryotes only2502
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load genes that interact physically with SPBC530.10c into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bytea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
affinity captured bynak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
affinity captured bypaa1protein phosphatase regulatory subunit Paa1 Affinity Capture-MSPMID:24634168
affinity captured byslm9hira protein Slm9 Affinity Capture-MSPMID:20976105
affinity captured bysog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
External References
Database Identifier Description
NBRP SPBC530.10c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC530.10c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC530.10c BioGRID Interaction Datasets
Expression Viewer SPBC530.10c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC530.10c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC530.10c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC530.10c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC530.10c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC530.10c Transcriptome Viewer (Bähler Lab)
GEO SPBC530.10c GEO profiles
PInt SPBC530.10c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC530.10c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC530.10c Fission yeast phenotypic data & analysis
Cyclebase SPBC530.10c.1 Cell Cycle Data
SPD / RIKEN32/32B08Orfeome Localization Data
UniProtKB/SwissProtQ09188ADP,ATP carrier protein
ModBaseQ09188Database of comparative protein structure models
STRINGQ09188Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_595323mitochondrial adenine nucleotide carrier Anc1
RefSeq mRNANM_001021230972h- mitochondrial adenine nucleotide carrier Anc1 (anc1), mRNA
European Nucleotide ArchiveD89102ENA EMBL mapping
European Nucleotide ArchiveCAA19176.1ENA Protein Mapping
European Nucleotide ArchiveCAA90275.1ENA Protein Mapping
UniParcUPI0000125627UniProt Archive

Literature for anc1

Search: Europe PMC or PubMed

Release Version: PomBase:30_61 - 12 Sep 2016