rpl1901 (SPBC56F2.02)


Gene Standard Namerpl1901 Characterisation Statuspublished
Systematic IDSPBC56F2.02 Feature Typeprotein coding
Synonymsrpl19-1 Name Description
Product60S ribosomal protein L19 Product Size193aa, 22.72 kDa
Genomic Location Chromosome II, 4123804-4123056 (749nt); CDS:4123720-4123139 (582nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome257
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation469
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2302
Annotation ExtensionEvidenceWith/FromReference
cytosolic large ribosomal subunit83
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
viable vegetative cell populationrpl1901Δ3850

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell with normal cell morphologyrpl1901Δ3102
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons4123804..4123056
mRNA4123804..4123056
5' UTR4123804..4123721PMID:21511999
CDS4123720..4123139
3' UTR4123138..4123056PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01280 Pfam IPR000196 Ribosomal protein L19/L19e 3 145 2
SM01416 SMART IPR000196 Ribosomal protein L19/L19e 3 146 2
PTHR10722 HMMPANTHER 1 193 2
1vq8P01 Gene3D IPR015972 Ribosomal protein L19/L19e, domain 1 1 54 2
1vq8P03 Gene3D IPR015974 Ribosomal protein L19/L19e, domain 3 91 148 2
0037541 SuperFamily IPR000196 Ribosomal protein L19/L19e 3 143 2
Coil ncoils Predicted coiled-coil protein (DUF2205) 144 164 1055
MF_01475 HAMAP IPR000196 Ribosomal protein L19/L19e 3 149 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 117.74 Da
Charge 38.50
Codon Adaptation Index 0.73
Isoelectric point 11.95
Molecular weight 22.72 kDa
Number of residues 193
Modifications

Protein Modifications

Term NameResidueCount
O4'-phospho-L-tyrosineY120, Y124 281
Annotation ExtensionEvidenceResidueReference
IDA Y120 PMID:25720772
IDA Y124 PMID:25720772
ubiquitinylated lysineK175, K180, K190 512
Annotation ExtensionEvidenceResidueReference
mass spectrometry evidence K175 PMID:26412298
mass spectrometry evidence K180 PMID:26412298
mass spectrometry evidence K190 PMID:26412298
IDA PMID:26412298
Sequence
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for rpl1901 (SPBC56F2.02)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
362935during GO:0000080PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
360959during GO:0000084PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
333693during GO:0000085PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
367759during GO:0000087PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
61480.93during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
335370during GO:0072690PECO:0000005,
PECO:0000126
single cellmass spectrometry evidencePMID:24763107
5163.36during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
57during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
5.9during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
conserved in fungi4607
conserved in eukaryotes4517
conserved in metazoa3427
conserved in vertebrates3402
conserved in archaea242
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Load genes that interact physically with SPBC56F2.02 into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bytea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
affinity captured bycid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
affinity captured bynak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
affinity captured bysog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
affinity captured byimp1importin alpha Affinity Capture-MSPMID:25963819
External References
Database Identifier Description
NBRP SPBC56F2.02 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC56F2.02 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC56F2.02 BioGRID Interaction Datasets
Expression Viewer SPBC56F2.02 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC56F2.02 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC56F2.02 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC56F2.02 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC56F2.02 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC56F2.02 Transcriptome Viewer (Bähler Lab)
GEO SPBC56F2.02 GEO profiles
PInt SPBC56F2.02 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC56F2.02 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC56F2.02 Fission yeast phenotypic data & analysis
Cyclebase SPBC56F2.02.1 Cell Cycle Data
SPD / RIKEN31/31E11Orfeome Localization Data
UniProtKB/SwissProtP0573460S ribosomal protein L19-A
ModBaseP05734Database of comparative protein structure models
STRINGP05734Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59671560S ribosomal protein L19
RefSeq mRNANM_001022640972h- 60S ribosomal protein L19 (rpl1901), mRNA
European Nucleotide ArchiveAB015169ENA EMBL mapping
European Nucleotide ArchiveCAA18881.1ENA Protein Mapping
UniParcUPI000016210AUniProt Archive

Literature for rpl1901

Search: Europe PMC or PubMed

Release Version: PomBase:30_61 - 12 Sep 2016