rpl1901 (SPBC56F2.02)


Gene Standard Namerpl1901 Characterisation Statuspublished
Systematic IDSPBC56F2.02 Feature Typeprotein coding
Synonymsrpl19-1 Name Description
Product60S ribosomal protein L19 Product Size193aa, 22.72 kDa
Genomic Location Chromosome II, 4123804-4123056 (749nt); CDS:4123720-4123139 (582nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0003735structural constituent of ribosomeISOSGD:S000002156GO_REF:0000024255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0002181cytoplasmic translationNASGO_REF:0000051446
GO:0006412translationISOSGD:S000002156GO_REF:0000024599
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005829cytosolIDAPMID:168233722319
GO:0022625cytosolic large ribosomal subunitISOSGD:S000002156GO_REF:000002482
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopyrpl1901ΔNullPECO:0000005, PECO:0000137PMID:236978063751
Microscopyrpl1901ΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3088
penetrance FYPO_EXT:0000001Microscopyrpl1901ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
141238044123056
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01280 Pfam IPR000196 Ribosomal protein L19/L19e domain 3 148 2
PTHR10722 HMMPANTHER 1 193 2
1vq8P01 Gene3D IPR015972 Ribosomal protein L19/L19e, domain 1 1 54 2
1vq8P03 Gene3D IPR015974 Ribosomal protein L19/L19e, domain 3 91 148 2
0037541 SuperFamily IPR000196 Ribosomal protein L19/L19e domain 3 143 2
Coil ncoils Rabaptin coiled-coil domain 144 165 968

View domain organization at Pfam

Protein Properties

Ave. residue weight 117.74 Da
Charge 38.50
Isoelectric point 11.95
Molecular weight 22.72 kDa
Number of residues 193
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
362935during GO:0000080PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
360959during GO:0000084PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
333693during GO:0000085PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
367759during GO:0000087PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
335370during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
61480.93during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
5163.36during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
57during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
5.9during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4599
conserved in eukaryotes4514
conserved in metazoa3428
conserved in vertebrates3402
conserved in archaea237
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
bdf2BET family double bromodomain protein Bdf2 Affinity Capture-MSPMID:24013502
sog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
epe1Jmjc domain chromatin associated protein Epe1 Affinity Capture-MSPMID:24013502
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
External References
Database Identifier Description
NBRP SPBC56F2.02 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC56F2.02 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC56F2.02 BioGRID Interaction Datasets
Expression Viewer SPBC56F2.02 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC56F2.02 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC56F2.02 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC56F2.02 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC56F2.02 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC56F2.02 Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC56F2.02 Cell Cycle Data
GEO SPBC56F2.02 GEO profiles
PInt SPBC56F2.02 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC56F2.02 Peptides identified in tandem mass spectrometry proteomics experiments
SPD / RIKEN31/31E11Orfeome Localization Data
UniProtKB/SwissProtP0573460S ribosomal protein L19-A
ModBaseP05734Database of comparative protein structure models
STRINGP05734Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59671560S ribosomal protein L19
RefSeq mRNANM_001022640972h- 60S ribosomal protein L19 (rpl1901), mRNA
European Nucleotide ArchiveAB015169ENA EMBL mapping
European Nucleotide ArchiveCAA18881.1ENA Protein Mapping
UniParcUPI000016210AUniProt Archive

Literature for rpl1901

Search: Europe PMC or PubMed

Release Version: PomBase:23_46 - 30 Aug 2014