pex11 (SPBC582.09)

Gene Standard Namepex11 ChromosomeII
Systematic IDSPBC582.09 Gene Start434811
Synonyms Gene End436173
Productperoxisomal biogenesis factor 11 (predicted) Gene Length1363
Feature Typeprotein coding CDS Start434873
Name Description CDS End435973
Characterisation Statusbiological_role_inferred CDS Length1101

Ensembl Gene Location
  1. brc1
  2. SPNCRNA.1356
  3. mcp6
  4. rpn7
  5. SPBC582.08
  6. pex11
  7. SPBC582.10c
  8. SPNCRNA.1357
  9. nup107
  10. eca39
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopypex11delta (deletion)deletionPMID:20473289
GO Biological Process

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0007031peroxisome organizationISOSGD:S000005507GO_REF:0000024
GO:0016559peroxisome fissionIEAIPR008733GO_REF:0000002
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005739mitochondrionIDAPMID:16823372
GO:0005778peroxisomal membraneISOSGD:S000005507GO_REF:0000024
GO:0005779integral to peroxisomal membraneIEAIPR008733GO_REF:0000002
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1434811434917
2434962434991
3435283435761
4435811436173

References

Region Start End Reference
three_prime_UTR435974436173PMID:21511999
three_prime_UTR435974436173PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF05648 IPR008733 Pfam Peroxisomal biogenesis factor 11 12 234 1
PTHR12652:SF9 hmmpanther 7 234 1
PTHR12652 IPR008733 hmmpanther Peroxisomal biogenesis factor 11 7 234 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 111.26 Da
Charge 10.50
Isoelectric point 9.63
Molecular weight 26.48 kDa
Number of residues 238
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide16300.23PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide17725.63PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1.1PMID:23101633
experimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide5.2PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
rhn1RNA polymerase II transcription termination factor homolog Positive GeneticPMID:22681890
hip1hira protein, histone chaperone Hip1 Positive GeneticPMID:22681890
srb11cyclin CycC, Srb mediator subunit Srb11 Positive GeneticPMID:22681890
usp102U1 snRNP-associated protein Usp102 Positive GeneticPMID:22681890
mcl1DNA polymerase alpha accessory factor Mcl1 Positive GeneticPMID:22681890
rem1meiosis-specific cyclin Rem1 Positive GeneticPMID:22681890
rok1ATP-dependent RNA helicase Rok1 (predicted) Positive GeneticPMID:22681890
iwr1RNA polymerase II nuclear import protein Iwr1 (predicted) Positive GeneticPMID:22681890
SPAC1952.06cspliceosomal complex subunit (predicted) Positive GeneticPMID:22681890
lsk1P-TEFb-associated cyclin-dependent protein kinase Lsk1 Positive GeneticPMID:22681890
slx4structure-specific endonuclease subunit Slx4 Positive GeneticPMID:22681890
SPBC1105.08EMP70 family Positive GeneticPMID:22681890
kin1microtubule affinity-regulating kinase Kin1 Negative GeneticPMID:22681890
dad1DASH complex subunit Dad1 Negative GeneticPMID:22681890
fft3fun thirty related protein Fft3 Negative GeneticPMID:22681890
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External References
Database Identifier Description
NBRP SPBC582.09 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC582.09 Retrieval of eukaryotic orthologs
BioGrid SPBC582.09 BioGRID Interaction Datasets
Bähler Lab SPBC582.09 Cell Cycle Expression Profile
Bähler Lab SPBC582.09 Meiosis/Sporulation Expression Profies
Bähler Lab SPBC582.09 Pheromone response/mating expression profiles
Bähler Lab SPBC582.09 Environmental stress expression profiles
Bähler Lab SPBC582.09 Bähler Lab Transcriptome Viewer
Cyclebase SPBC582.09 Cell Cycle Data
PInt SPBC582.09 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC582.09 Entrez Gene
EntrezGene2541114peroxisomal biogenesis factor 11
WikiGene2541114peroxisomal biogenesis factor 11
SPD / RIKEN17/17C06Orfeome Localization Data
UniProtKB/SwissProtQ10333Uncharacterized protein C582.09
ModBaseQ10333Database of comparative protein structure models
Pfam Protein DomainsQ10333Pfam Domain Arrangement
RefSeq PeptideNP_595177peroxisomal biogenesis factor 11
RefSeq mRNANM_001021085972h- peroxisomal biogenesis factor 11 (pex11), mRNA
European Nucleotide ArchiveCAB46672ENA Protein Mapping
UniParcUPI000013A3B5UniProt Archive

Literature for pex11
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013