pob3 (SPBC609.05)


Gene Standard Namepob3 Characterisation Statuspublished
Systematic IDSPBC609.05 Feature Typeprotein coding
Synonyms Name Description
ProductFACT complex subunit Pob3 Product Size512aa, 57.46 kDa
Genomic Location Chromosome II, 3169409-3171345 (1937nt); CDS:3169409-3171006 (1598nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
DNA binding379
Annotation ExtensionEvidenceWith/FromReference
protein binding859
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cellular protein localization552
Annotation ExtensionEvidenceWith/FromReference
chromatin silencing at centromere61
Annotation ExtensionEvidenceWith/FromReference
chromatin silencing at centromere outer repeat region26
Annotation ExtensionEvidenceWith/FromReference
chromatin silencing at silent mating-type cassette36
Annotation ExtensionEvidenceWith/FromReference
histone exchange23
Annotation ExtensionEvidenceWith/FromReference
mitotic sister chromatid segregation184
Annotation ExtensionEvidenceWith/FromReference
nucleosome assembly27
Annotation ExtensionEvidenceWith/FromReference
positive regulation of RNA polymerase II transcriptional preinitiation complex assembly1
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2314
Annotation ExtensionEvidenceWith/FromReference
FACT complex2
Annotation ExtensionEvidenceWith/FromReference
nuclear chromatin318
Annotation ExtensionEvidenceWith/FromReference
nuclear replication fork62
Annotation ExtensionEvidenceWith/FromReference
nucleus2696
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term NameAlleleExpressionCount
sensitive to 5-fluorouracilpob3ΔNull271
sensitive to cadmiumpob3ΔNull246
viable vegetative cell populationpob3ΔNull3809
unnamed (unrecorded)

Cell Phenotype

Term NameAlleleExpressionCount
abnormal cell separation after cytokinesispob3ΔNull83
decreased chromatin silencing at centromere outer repeat regionpob3ΔNull35
elongated telomerespob3ΔNull169
viable vegetative cell, abnormal cell shape, normal cell sizepob3ΔNull215
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons3169409..3169645, 3169705..3171345
mRNA3169409..3171345
CDS3169409..3169645, 3169705..3171006
3' UTR3171007..3171345PMID:20118936
3' UTR3171007..3171345PMID:18641648
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF08512 Pfam IPR013719 Domain of unknown function DUF1747 354 445 3
PF03531 Pfam IPR024954 SSRP1 domain 74 300 1
PTHR13711 HMMPANTHER 19 512 4
PTHR13711:SF138 HMMPANTHER 19 512 1
2.30.29.30 Gene3D IPR011993 Pleckstrin homology-like domain 4 106 38
SSF50729 SuperFamily 209 445 36
PR00887 PRINTS IPR000969 Structure-specific recognition protein 361 379 1
PR00887 PRINTS IPR000969 Structure-specific recognition protein 405 421 1
PR00887 PRINTS IPR000969 Structure-specific recognition protein 421 439 1
PR00887 PRINTS IPR000969 Structure-specific recognition protein 246 262 1
PR00887 PRINTS IPR000969 Structure-specific recognition protein 334 347 1
PR00887 PRINTS IPR000969 Structure-specific recognition protein 269 285 1
PR00887 PRINTS IPR000969 Structure-specific recognition protein 379 396 1
PR00887 PRINTS IPR000969 Structure-specific recognition protein 224 240 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 112.22 Da
Charge -42.00
Isoelectric point 4.16
Molecular weight 57.46 kDa
Number of residues 512
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
27934during GO:0000080PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
29751during GO:0000084PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
24062during GO:0000085PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
29066during GO:0000087PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
30272during GO:0072690PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
16775.15during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
11153.93during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
5.5during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
0.79during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Miscellaneous Functional Group
DescriptionQualifierReferenceCount
histone chaperone14
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi4603
conserved in eukaryotes4514
conserved in metazoa3424
conserved in vertebrates3399
conserved in eukaryotes only2501
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bycbf11CBF1/Su(H)/LAG-1 family transcription factor Cbf11 Affinity Capture-MSPMID:22540037
affinity captured bymtl1TRAMP complex ATP-dependent RNA helicase (predicted) Affinity Capture-MSPMID:24713849
affinity captured byred1RNA elimination defective protein Red1 Affinity Capture-MSPMID:24713849
Genetic Interactions

Source: BioGRID

View these interactions in esyN

Gene Product Evidence Reference
positive genetic interaction withada1adenosine deaminase Ada1 Positive GeneticPMID:22681890
negative genetic interaction withaip1actin cortical patch component Aip1 Negative GeneticPMID:22681890
negative genetic interaction withair1zinc knuckle TRAMP complex subunit Air1 Negative GeneticPMID:18818364
negative genetic interaction withakr1palmitoyltransferase Akr1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withalg6glucosyltransferase Alg6 Negative GeneticPMID:22681890
negative genetic interaction withalm1medial ring protein Alm1 Negative GeneticPMID:22681890
negative genetic interaction withalp14TOG/XMAP14 family protein Alp14 Negative GeneticPMID:18818364
positive genetic interaction withamt1ammonium transmembrane transporter Amt1 Positive GeneticPMID:22681890
negative genetic interaction witharp42SWI/SNF and RSC complex subunit Arp42 Negative GeneticPMID:18818364
negative genetic interaction witharp6actin-like protein Arp6 Negative GeneticPMID:18818364
negative genetic interaction witharp8actin-like protein, Ino80 complex subunit Arp8 Negative GeneticPMID:18818364
negative genetic interaction witharp8actin-like protein, Ino80 complex subunit Arp8 Negative GeneticPMID:22681890
positive genetic interaction withasc1cofactor for cytoplasmic methionyl-and glutamyl-tRNA synthetases Asc1 (predicted) Positive GeneticPMID:22681890
negative genetic interaction withash2Ash2-trithorax family protein Negative GeneticPMID:18818364
negative genetic interaction withash2Ash2-trithorax family protein Negative GeneticPMID:22681890
negative genetic interaction withask1DASH complex subunit Ask1 Negative GeneticPMID:18818364
positive genetic interaction withasl1cell wall protein Asl1, predicted O-glucosyl hydrolase Positive GeneticPMID:22681890
negative genetic interaction withasp1inositol hexakisphosphate kinase/inositol pyrophosphate synthase (predicted) Negative GeneticPMID:22681890
positive genetic interaction withatg1801WD repeat protein involved in autophagy Atg18a Positive GeneticPMID:18818364
negative genetic interaction withatg22vacuolar amino acid transmembrane transporter Atg22 Negative GeneticPMID:22681890
negative genetic interaction withbdc1bromodomain containing protein 1, Bdc1 Negative GeneticPMID:18818364
negative genetic interaction withbdc1bromodomain containing protein 1, Bdc1 Negative GeneticPMID:22681890
negative genetic interaction withbdf1Swr1 complex bromodomain subunit Brf1 Negative GeneticPMID:18818364
negative genetic interaction withbdf2BET family double bromodomain protein Bdf2 Negative GeneticPMID:18818364
negative genetic interaction withbdf2BET family double bromodomain protein Bdf2 Negative GeneticPMID:22681890
negative genetic interaction withbtb2BTB/POZ domain protein Btb2 Negative GeneticPMID:22681890
positive genetic interaction withcaf4CCR4-Not complex subunit Caf4/Mdv1 (predicted) Positive GeneticPMID:18818364
negative genetic interaction withcay1cactin, spliceosome complex subunit Negative GeneticPMID:18818364
negative genetic interaction withccr4CCR4-Not complex subunit Ccr4 (predicted) Negative GeneticPMID:18818364
positive genetic interaction withcho1phosphatidyl-N-dimethylethanolamine N-methyltransferase Positive GeneticPMID:18818364
positive genetic interaction withcho1phosphatidyl-N-dimethylethanolamine N-methyltransferase Positive GeneticPMID:22681890
negative genetic interaction withchp1chromodomain protein Chp1 Negative GeneticPMID:18818364
negative genetic interaction withcip2RNA-binding protein Cip2 Negative GeneticPMID:22681890
negative genetic interaction withckb2CK2 family regulatory subunit Ckb2 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withclr3histone deacetylase (class II) Clr3 Negative GeneticPMID:18818364
inviable in presence of overexpressedcnp1centromere-specific histone H3 CENP-A Dosage LethalityPMID:23028377
negative genetic interaction withcoq11ubiquinone biosynthesis protein Coq11 Negative GeneticPMID:22681890
negative genetic interaction withcpd1tRNA (m1A) methyltransferase complex catalytic subunit Cpd1 Negative GeneticPMID:18818364
negative genetic interaction withcrb2DNA repair protein Rad9 homolog Crb2 Negative GeneticPMID:22681890
negative genetic interaction withcsk1cyclin-dependent kinase/ cyclin-dependent kinase activating kinase Csk1 Negative GeneticPMID:22681890
negative genetic interaction withcsn1COP9/signalosome complex subunit Csn1 Negative GeneticPMID:18818364
negative genetic interaction withdbl5ubiquitin-protein ligase E3 Dbl5 Negative GeneticPMID:18818364
negative genetic interaction withdbr1RNA lariat debranching enzyme Dbr1 Negative GeneticPMID:18818364
negative genetic interaction withdbr1RNA lariat debranching enzyme Dbr1 Negative GeneticPMID:22681890
negative genetic interaction withdcc1Ctf18 RFC-like complex subunit Dcc1 Negative GeneticPMID:22681890
negative genetic interaction withdcr1dicer Negative GeneticPMID:18818364
negative genetic interaction withdnm1mitochindrial dynamin family GTPase Dnm1 Negative GeneticPMID:18818364
positive genetic interaction withdsk1SR protein-specific kinase Dsk1 Positive GeneticPMID:22681890
negative genetic interaction witheca39branched chain amino acid aminotransferase Eca39 Negative GeneticPMID:22681890
positive genetic interaction withell1RNA polymerase II transcription elongation factor SpELL Positive GeneticPMID:22681890
negative genetic interaction withelp3elongator complex subunit Elp3 (predicted) Negative GeneticPMID:18818364
negative genetic interaction witheme1Holliday junction resolvase subunit Eme1 Negative GeneticPMID:18818364
negative genetic interaction witheme1Holliday junction resolvase subunit Eme1 Negative GeneticPMID:22681890
positive genetic interaction withepe1Jmjc domain chromatin associated protein Epe1 Positive GeneticPMID:18818364
negative genetic interaction witherd1Erd1 homolog (predicted) Negative GeneticPMID:22681890
negative genetic interaction withers1RNA-silencing factor Ers1 Negative GeneticPMID:18818364
negative genetic interaction withers1RNA-silencing factor Ers1 Negative GeneticPMID:22681890
negative genetic interaction withfft3SMARCAD1 family ATP-dependent DNA helicase Fft3 Negative GeneticPMID:18818364
negative genetic interaction withfft3SMARCAD1 family ATP-dependent DNA helicase Fft3 Negative GeneticPMID:22681890
negative genetic interaction withfin1serine/threonine protein kinase, NIMA related Fin1 Negative GeneticPMID:18818364
negative genetic interaction withfkbp39FKBP-type peptidyl-prolyl cis-trans isomerase (predicted) Negative GeneticPMID:18818364
negative genetic interaction withfmd2glutathione-dependent formaldehyde dehydrogenase (predicted) Negative GeneticPMID:22681890
negative genetic interaction withfsv1SNARE Fsv1 Negative GeneticPMID:22681890
negative genetic interaction withgcd10tRNA (m1A) methyltransferase Gcd10 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withgid5GID complex armadillo repeat subunit Gid5 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withgid9GID complex subunit Gid9 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withgit5heterotrimeric G protein beta subunit Git5 Negative GeneticPMID:22681890
negative genetic interaction withgpa2heterotrimeric G protein alpha-2 subunit Gpa2 Negative GeneticPMID:22681890
negative genetic interaction withgyp1GTPase activating protein Gyp1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withhap2HMG box protein (predicted) Negative GeneticPMID:22681890
negative genetic interaction withhat1histone acetyltransferase Hat1 Negative GeneticPMID:22681890
negative genetic interaction withhip1hira protein, histone chaperone Hip1 Negative GeneticPMID:18818364
enhances phenotype ofhip4histone promoter control protein Hip4 Phenotypic EnhancementPMID:19547744
positive genetic interaction withhob3BAR adaptor protein Hob3 Positive GeneticPMID:22681890
negative genetic interaction withhos2histone deacetylase (class I) Hos2 Negative GeneticPMID:18818364
positive genetic interaction withhrp3ATP-dependent DNA helicase Hrp3 Positive GeneticPMID:18818364
positive genetic interaction withhrp3ATP-dependent DNA helicase Hrp3 Positive GeneticPMID:22681890
negative genetic interaction withhrq1RecQ type DNA helicase Hrq1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withhta1histone H2A alpha Negative GeneticPMID:18818364
negative genetic interaction withhta1histone H2A alpha Negative GeneticPMID:22681890
negative genetic interaction withhus1checkpoint clamp complex protein Hus1 Negative GeneticPMID:22681890
negative genetic interaction withies2Ino80 complex subunit Ies2 Negative GeneticPMID:18818364
negative genetic interaction withies4Ino80 complex subunit Ies4 Negative GeneticPMID:22681890
negative genetic interaction withilv1acetolactate synthase catalytic subunit Negative GeneticPMID:22681890
negative genetic interaction withimp1importin alpha Negative GeneticPMID:22681890
negative genetic interaction withist1MVB sorting pathway protein (predicted) Negative GeneticPMID:22681890
negative genetic interaction withkap114karyopherin Kap14 Negative GeneticPMID:18818364
negative genetic interaction withklp6kinesin-like protein Klp6 Negative GeneticPMID:18818364
positive genetic interaction withlag1sphingosine N-acyltransferase Lag1 Positive GeneticPMID:22681890
negative genetic interaction withlsb5cortical component Lsb5 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withmak10NatC N-acetyltransferase complex subunit Mak10 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withmba1mitochondrial respiratory complex assembly protein Mba1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withmcl1DNA polymerase alpha accessory factor Mcl1 Negative GeneticPMID:18818364
negative genetic interaction withmcs2TFIIH complex cyclin Mcs2 Negative GeneticPMID:22681890
negative genetic interaction withmed20mediator complex subunit Med20 Negative GeneticPMID:18818364
negative genetic interaction withmed6mediator complex subunit Med6 Negative GeneticPMID:18818364
positive genetic interaction withmei4meiotic forkhead transcription factor Mei4 Positive GeneticPMID:18818364
negative genetic interaction withmet16phosphoadenosine phosphosulfate reductase Negative GeneticPMID:22681890
negative genetic interaction withmhf2CENP-X homolog, FANCM-MHF complex subunit Mhf2 Negative GeneticPMID:22681890
synthetic lethal withmis18kinetochore protein Mis18 Synthetic LethalityPMID:23028377
synthetic lethal withmis6inner centromere protein, CENP-I ortholog Mis6 Synthetic LethalityPMID:23028377
negative genetic interaction withmlo2ubiquitin protein ligase E3 component human N-recognin 7 homolog Mlo2 Negative GeneticPMID:22681890
negative genetic interaction withmms1E3 ubiquitin ligase complex subunit Mms1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withmms19Dos2 silencing complex subunit Mms19 Negative GeneticPMID:18818364
negative genetic interaction withmms19Dos2 silencing complex subunit Mms19 Negative GeneticPMID:22681890
negative genetic interaction withmoe1translation initiation factor eIF3d Moe1 Negative GeneticPMID:22681890
negative genetic interaction withmrc1mediator of replication checkpoint 1 Negative GeneticPMID:18818364
negative genetic interaction withmre11Mre11 nuclease Negative GeneticPMID:18818364
negative genetic interaction withmrpl1mitochondrial ribosomal protein subunit L1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withmsc1Swr1 complex subunit Chk1 Negative GeneticPMID:18818364
negative genetic interaction withmsc1Swr1 complex subunit Chk1 Negative GeneticPMID:22681890
negative genetic interaction withmst2histone acetyltransferase Mst2 Negative GeneticPMID:22681890
positive genetic interaction withmsy2MS ion channel protein 2 (predicted) Positive GeneticPMID:22681890
negative genetic interaction withmto1MT organizer Mto1 Negative GeneticPMID:22681890
negative genetic interaction withmug123Schizosaccharomyces specific protein Mug123 Negative GeneticPMID:22681890
negative genetic interaction withmug154conserved fungal protein Negative GeneticPMID:18818364
negative genetic interaction withmug154conserved fungal protein Negative GeneticPMID:22681890
positive genetic interaction withmug20Schizosaccharomyces specific protein Mug20 Positive GeneticPMID:22681890
positive genetic interaction withmug28RNA-binding protein Mug28 Positive GeneticPMID:18818364
positive genetic interaction withmug33Tea1-interacting protein involved in exocytosis Positive GeneticPMID:22681890
negative genetic interaction withmug70conserved protein Mug70 Negative GeneticPMID:22681890
negative genetic interaction withmug80cyclin Clg1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withmus7DNA repair protein Mus7/Mms22 Negative GeneticPMID:22681890
negative genetic interaction withnap1nucleosome assembly protein Nap1 Negative GeneticPMID:18818364
negative genetic interaction withnap1nucleosome assembly protein Nap1 Negative GeneticPMID:22681890
positive genetic interaction withnep2NEDD8 protease Nep2 Positive GeneticPMID:22681890
negative genetic interaction withnht1Ino80 complex HMG box subunit Nht1 Negative GeneticPMID:22681890
negative genetic interaction withnot2CCR4-Not complex subunit Not2 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withnot3CCR4-Not complex subunit Not3/5 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withnse6Smc5-6 complex non-SMC subunit Nse6 Negative GeneticPMID:22681890
negative genetic interaction withnup132nucleoporin Nup132 Negative GeneticPMID:22681890
positive genetic interaction withnup37WD repeat protein, nucleoporin Nup37 Positive GeneticPMID:18818364
negative genetic interaction withpab2poly(A) binding protein Pab2 Negative GeneticPMID:18818364
negative genetic interaction withpab2poly(A) binding protein Pab2 Negative GeneticPMID:22681890
enhances phenotype ofpcf1CAF assembly factor (CAF-1) complex large subunit Pcf1 Phenotypic EnhancementPMID:19547744
negative genetic interaction withpcf2CAF assembly factor (CAF-1) complex subunit B, Pcf2 Negative GeneticPMID:22681890
negative genetic interaction withpcf3CAF assembly factor (CAF-1) complex subunit C, Pcf3 Negative GeneticPMID:18818364
negative genetic interaction withpek1MAP kinase kinase Pek1 Negative GeneticPMID:22681890
negative genetic interaction withpht1histone H2A variant H2A.Z, Pht1 Negative GeneticPMID:22681890
negative genetic interaction withpmc2mediator complex subunit Pmc2/Med1 Negative GeneticPMID:18818364
negative genetic interaction withpmc2mediator complex subunit Pmc2/Med1 Negative GeneticPMID:22681890
negative genetic interaction withpmk1MAP kinase Pmk1 Negative GeneticPMID:18818364
negative genetic interaction withpmt3SUMO Negative GeneticPMID:22681890
negative genetic interaction withpng2ING family homolog Png2 Negative GeneticPMID:18818364
negative genetic interaction withpng2ING family homolog Png2 Negative GeneticPMID:22681890
negative genetic interaction withpsh3ER chaperone SHR3 homologue Psh3 Negative GeneticPMID:22681890
positive genetic interaction withpso2DNA 5' exonuclease (predicted) Positive GeneticPMID:22681890
negative genetic interaction withptf2Mst2 histone acetytransferase acytyltransferase complex subunit Negative GeneticPMID:22681890
negative genetic interaction withpun1SUR7 family protein Pun1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withrad1checkpoint clamp complex protein Rad1 Negative GeneticPMID:18818364
negative genetic interaction withrad1checkpoint clamp complex protein Rad1 Negative GeneticPMID:22681890
negative genetic interaction withrad17RFC related checkpoint protein Rad17 Negative GeneticPMID:18818364
negative genetic interaction withrad17RFC related checkpoint protein Rad17 Negative GeneticPMID:22681890
negative genetic interaction withrad26ATRIP, ATR checkpoint kinase regulatory subunit Rad26 Negative GeneticPMID:18818364
enhances phenotype ofrad3ATR checkpoint kinase Rad3 Phenotypic EnhancementPMID:19547744
negative genetic interaction withrad51RecA family recombinase Rad51/Rhp51 Negative GeneticPMID:18818364
negative genetic interaction withrad9checkpoint clamp complex protein Rad9 Negative GeneticPMID:18818364
negative genetic interaction withrcd1RNA-binding protein, CCR4-NOT complex subunit Rcd1 Negative GeneticPMID:22681890
negative genetic interaction withrdh54ATP-dependent DNA helicase Rdh54 Negative GeneticPMID:18818364
negative genetic interaction withrdp1RNA-directed RNA polymerase Rdp1 Negative GeneticPMID:18818364
negative genetic interaction withred1RNA elimination defective protein Red1 Negative GeneticPMID:22681890
negative genetic interaction withres2MBF transcription factor complex subunit Res2 Negative GeneticPMID:18818364
negative genetic interaction withrhn1RNA polymerase II transcription termination factor homolog Negative GeneticPMID:18818364
negative genetic interaction withrhn1RNA polymerase II transcription termination factor homolog Negative GeneticPMID:22681890
positive genetic interaction withrlp1RecA family ATPase Rlp1 Positive GeneticPMID:22681890
negative genetic interaction withrnc1RNA-binding protein that suppresses calcineurin deletion Rnc1 Negative GeneticPMID:22681890
negative genetic interaction withrpa12DNA-directed RNA polymerase complex I subunit Rpa12 Negative GeneticPMID:18818364
negative genetic interaction withrpl210260S ribosomal protein L21 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withrps340S ribosomal protein S3 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withrrg9mitochondrial genome maintenance protein Rrg9 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withrsc4RSC complex subunit Rsc4 Negative GeneticPMID:22681890
negative genetic interaction withrud3Golgi matrix protein Rud3 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withsat1Golgi membrane exchange factor subunit Sat1 (predicted) Negative GeneticPMID:18818364
positive genetic interaction withscs7sphingosine hydroxylase Scs7 Positive GeneticPMID:22681890
negative genetic interaction withsdc1Dpy-30 domain protein Sdc1 Negative GeneticPMID:18818364
positive genetic interaction withsec72Sec7 domain protein, ARF GEF Sec72 Positive GeneticPMID:22681890
negative genetic interaction withseh1Seh1-associated complex subunit Seh1 Negative GeneticPMID:22681890
negative genetic interaction withser2phosphoserine phosphatase Ser2 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withset3histone lysine methyltransferase Set3 Negative GeneticPMID:18818364
negative genetic interaction withset3histone lysine methyltransferase Set3 Negative GeneticPMID:22681890
negative genetic interaction withshk2PAK-related kinase Shk2 Negative GeneticPMID:18818364
negative genetic interaction withsil1nucleotide exchange factor for the ER lumenal Hsp70 chaperone, Sil1 (predicted) Negative GeneticPMID:22681890
positive genetic interaction withski3Ski complex TPR repeat subunit Ski3 (predicted) Positive GeneticPMID:22681890
negative genetic interaction withsno1glutamine aminotransferase subunit Sno1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withsnt2Lid2 complex subunit Snt2 Negative GeneticPMID:18818364
negative genetic interaction withsnt2Lid2 complex subunit Snt2 Negative GeneticPMID:22681890
negative genetic interaction withsnz1pyridoxine biosynthesis protein Negative GeneticPMID:22681890
negative genetic interaction withSPAC1071.09cDNAJ domain protein, DNAJC9 family (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPAC10F6.13caspartate aminotransferase (predicted) Negative GeneticPMID:22681890
positive genetic interaction withSPAC12B10.01cHECT-type ubiquitin-protein ligase E3 (predicted) Positive GeneticPMID:18818364
negative genetic interaction withSPAC12G12.07cconserved fungal protein Negative GeneticPMID:22681890
negative genetic interaction withSPAC12G12.11cDUF544 family protein Negative GeneticPMID:22681890
positive genetic interaction withSPAC139.01cnuclease, XP-G family (predicted) Positive GeneticPMID:22681890
negative genetic interaction withSPAC13G6.09SSU-rRNA maturation protein Tsr4 homolog 2 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPAC17H9.13cglutamate 5-kinase (predicted) Negative GeneticPMID:22681890
positive genetic interaction withSPAC1805.14Schizosaccharomyces specific protein Positive GeneticPMID:22681890
negative genetic interaction withSPAC19B12.11czinc finger protein, human ZNF593 ortholog Negative GeneticPMID:18818364
negative genetic interaction withSPAC1A6.01chuman thyroid receptor interacting protein homolog, transcription coactivator (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPAC1B3.02ctranscription elongation factor, Elf1 family (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPAC23C4.09cDNA-binding TFAR19-related protein (predicted) Negative GeneticPMID:22681890
positive genetic interaction withSPAC24B11.08cCOPII-coated vesicle component Erv46 (predicted) Positive GeneticPMID:22681890
negative genetic interaction withSPAC30C2.07Schizosaccharomyces specific protein Negative GeneticPMID:22681890
negative genetic interaction withSPAC4A8.06cesterase/lipase (predicted) Negative GeneticPMID:22681890
positive genetic interaction withSPAC8C9.04Schizosaccharomyces specific protein Positive GeneticPMID:22681890
positive genetic interaction withSPAC977.17MIP water channel (predicted) Positive GeneticPMID:22681890
negative genetic interaction withSPBC16C6.03cribosome assembly protein (predicted) Negative GeneticPMID:22681890
positive genetic interaction withSPBC16C6.05mitochondrial translation initiation factor (predicted) Positive GeneticPMID:18818364
negative genetic interaction withSPBC16H5.13WD repeat protein, human WDR7 ortholog Negative GeneticPMID:18818364
negative genetic interaction withSPBC31F10.10czf-MYND type zinc finger protein Negative GeneticPMID:18818364
positive genetic interaction withSPBC354.09cTre1 family protein, involved in vacuolar protein degradation (predicted) Positive GeneticPMID:18818364
negative genetic interaction withSPBC36B7.08cnucleosome assembly protein (predicted) Negative GeneticPMID:18818364
positive genetic interaction withSPBC3F6.01cserine/threonine protein phosphatase (predicted) Positive GeneticPMID:18818364
negative genetic interaction withSPBC56F2.08cRNA-binding protein (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPBC651.04Schizosaccharomyces specific protein Negative GeneticPMID:22681890
negative genetic interaction withSPBC839.03cneddylation protein Dcn1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPBC947.06cspermidine family transmembrane transporter (predicted) Negative GeneticPMID:22681890
positive genetic interaction withSPBC9B6.11cCCR4/nocturin family endoribonuclease (predicted) Positive GeneticPMID:22681890
positive genetic interaction withSPBPB2B2.09c2-dehydropantoate 2-reductase Pan5 (predicted) Positive GeneticPMID:22681890
negative genetic interaction withSPCC18.10pyridoxine-pyridoxal-pyridoxamine kinase (predicted) Negative GeneticPMID:18818364
negative genetic interaction withSPCC18.10pyridoxine-pyridoxal-pyridoxamine kinase (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPCC18.13tRNA (guanine-N7-)-methyltransferase subunit Trm82 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPCC18B5.05cphosphomethylpyrimidine kinase (predicted) Negative GeneticPMID:18818364
negative genetic interaction withSPCC18B5.05cphosphomethylpyrimidine kinase (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPCC24B10.18human Leydig cell tumor 10 kDa protein homolog Negative GeneticPMID:22681890
negative genetic interaction withSPCC306.11Schizosaccharomyces specific protein Negative GeneticPMID:22681890
negative genetic interaction withSPCC594.04csteroid oxidoreductase superfamily protein (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPCC70.10Schizosaccharomyces specific protein Negative GeneticPMID:22681890
negative genetic interaction withspe1ornithine decarboxylase Spe1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withssb3DNA replication factor A subunit Ssb3 Negative GeneticPMID:22681890
negative genetic interaction withssu72phosphoric ester hydrolase Ssu72 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withswc2Swr1 complex complex subunit Swc2 Negative GeneticPMID:18818364
negative genetic interaction withswc2Swr1 complex complex subunit Swc2 Negative GeneticPMID:22681890
negative genetic interaction withswc3Swr1 complex subunit Swc3 Negative GeneticPMID:18818364
negative genetic interaction withswc3Swr1 complex subunit Swc3 Negative GeneticPMID:22681890
negative genetic interaction withswc5Swr1 complex subunit Swc5 Negative GeneticPMID:18818364
negative genetic interaction withswd22mRNA cleavage and polyadenylation specificity factor complex subunit, WD repeat protein Swd22 Negative GeneticPMID:18818364
negative genetic interaction withswd22mRNA cleavage and polyadenylation specificity factor complex subunit, WD repeat protein Swd22 Negative GeneticPMID:22681890
negative genetic interaction withswr1SNF2 family ATP-dependent DNA helicase Swr1 Negative GeneticPMID:18818364
negative genetic interaction withswr1SNF2 family ATP-dependent DNA helicase Swr1 Negative GeneticPMID:22681890
positive genetic interaction withtcg1single-stranded telomeric binding protein Tgc1 Positive GeneticPMID:22681890
negative genetic interaction withtco89TORC1 subunit Tco89 Negative GeneticPMID:22681890
negative genetic interaction withtdp1tyrosyl-DNA phosphodiesterase Tdp1 Negative GeneticPMID:18818364
positive genetic interaction withtef101translation elongation factor EF-1 alpha Ef1a-a Positive GeneticPMID:22681890
negative genetic interaction withtif452translation initiation factor eIF4E, 4F complex E subunit isoform 2, stress response factor Negative GeneticPMID:22681890
positive genetic interaction withtma20RNA-binding protein Tma20 (predicted) Positive GeneticPMID:22681890
positive genetic interaction withtma23ribosome biogenesis protein Tma23 (predicted) Positive GeneticPMID:18818364
positive genetic interaction withtma23ribosome biogenesis protein Tma23 (predicted) Positive GeneticPMID:22681890
negative genetic interaction withtpp1trehalose-6-phosphate phosphatase Tpp1 Negative GeneticPMID:22681890
negative genetic interaction withtrm112protein and tRNA methyltransferase regulatory subunit Trm112 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withtrm8tRNA (guanine-N7-)-methyltransferase catalytic subunit Trm8 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withtsc1hamartin Negative GeneticPMID:22681890
negative genetic interaction withtwf1twinfilin (predicted) Negative GeneticPMID:22681890
negative genetic interaction withubc16ubiquitin conjugating enzyme E2 Ubc16 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withulp2SUMO deconjugating cysteine peptidase Ulp2 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withura5orotate phosphoribosyltransferase Ura5 Negative GeneticPMID:18818364
positive genetic interaction withusp103U1 snRNP-associated protein Usp103 Positive GeneticPMID:18818364
negative genetic interaction withvht1vitamin H transmembrane transporter Vht1 Negative GeneticPMID:22681890
negative genetic interaction withvps71Swr1 complex subunit Vps71 Negative GeneticPMID:18818364
negative genetic interaction withvsl1vacuolar SNARE Vsl1/Vam7 Negative GeneticPMID:22681890
positive genetic interaction withyip5Rab GTPase binding Yip5 (predicted) Positive GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPBC609.05 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC609.05 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC609.05 BioGRID Interaction Datasets
Expression Viewer SPBC609.05 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC609.05 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC609.05 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC609.05 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC609.05 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC609.05 Transcriptome Viewer (Bähler Lab)
GEO SPBC609.05 GEO profiles
PInt SPBC609.05 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC609.05 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC609.05 Fission yeast phenotypic data & analysis
Cyclebase SPBC609.05.1 Cell Cycle Data
SPD / RIKEN25/25F06Orfeome Localization Data
UniProtKB/SwissProtO94529FACT complex subunit pob3
ModBaseO94529Database of comparative protein structure models
STRINGO94529Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_596315FACT complex component Pob3
RefSeq mRNANM_001022237972h- FACT complex component Pob3 (pob3), mRNA
European Nucleotide ArchiveCAA22834.1ENA Protein Mapping
UniParcUPI000006C66FUniProt Archive

Literature for pob3

Search: Europe PMC or PubMed

Release Version: PomBase:26_52 - 11 May 2015