rps001 (SPBC685.06)


Gene Standard Namerps001 Characterisation Statuspublished
Systematic IDSPBC685.06 Feature Typeprotein coding
Synonymsrps0, rps0-1, rpsa-1 Name Description
Product40S ribosomal protein S0A (p40) Product Size292aa, 31.76 kDa
Genomic Location Chromosome II, 2778868-2779942 (1075nt); CDS:2778923-2779856 (934nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
protein binding831
Annotation ExtensionEvidenceWith/FromReference
structural constituent of ribosome255
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation473
Annotation ExtensionEvidenceWith/FromReference
ribosomal small subunit assembly5
Annotation ExtensionEvidenceWith/FromReference
ribosomal small subunit biogenesis54
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2315
Annotation ExtensionEvidenceWith/FromReference
cytosolic small ribosomal subunit65
Annotation ExtensionEvidenceWith/FromReference
nucleus2740
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopyrps001ΔNullPECO:0000005, PECO:0000137PMID:236978063759
Microscopyrps001ΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3089
penetrance FYPO_EXT:0000001Microscopyrps001ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
127788682778961
227790172779942

UTRs

Region Coordinates Reference
five_prime_UTR2778868..2778922PMID:21511999
three_prime_UTR2779857..2779942PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00318 Pfam IPR001865 Ribosomal protein S2 119 186 3
PF00318 Pfam IPR001865 Ribosomal protein S2 20 115 3
PS00963 Prosite Patterns IPR018130 Ribosomal protein S2, conserved site 121 145 2
PTHR11489 HMMPANTHER IPR005707 Ribosomal protein S2, eukaryotic/archaeal 5 288 2
3.40.50.10490 Gene3D 34 217 5
SSF52313 SuperFamily IPR023591 Ribosomal protein S2, flavodoxin-like domain 14 202 3
Coil ncoils Rabaptin coiled-coil domain 212 233 968
PR00395 PRINTS IPR001865 Ribosomal protein S2 47 56 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 138 149 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 159 173 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 17 35 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 96 113 3
PR00395 PRINTS IPR001865 Ribosomal protein S2 121 138 3
TIGR01012 tigrfam IPR005707 Ribosomal protein S2, eukaryotic/archaeal 14 207 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 108.77 Da
Charge -6.50
Isoelectric point 4.95
Molecular weight 31.76 kDa
Number of residues 292
Modifications

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00046O-phospho-L-serineIDAT106PMID:182575171670
present during cellular response to thiabendazole
present during cellular response to thiabendazoleIDAS45PMID:18257517
MOD:00696phosphorylated residueNASPMID:182575171922
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
650318during GO:0000080PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
633405during GO:0000084PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
642540during GO:0000085PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
643587during GO:0000087PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
77480.18during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
636115during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
15421.55during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
93during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
7.9during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4600
conserved in eukaryotes4514
conserved in bacteria1000
conserved in metazoa3425
conserved in vertebrates3400
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
rps2140S ribosomal protein S21 Two-hybridPMID:14623272
Affinity Capture-Western
nse1Smc5-6 complex ubiquitin-protein ligase E3 subunit 1 Two-hybridPMID:15331764
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
paa1protein phosphatase regulatory subunit Paa1 Affinity Capture-MSPMID:24634168
Genetic Interactions

Source: BioGRID

View these interactions in esyN

Gene Product Evidence Reference
vps35retromer complex subunit Vps35 Positive GeneticPMID:22681890
pmc1mediator complex subunit Pmc1 Negative GeneticPMID:22681890
cdt2WD repeat protein Cdt2 Negative GeneticPMID:22681890
prp43ATP-dependent RNA helicase Prp43 Negative GeneticPMID:22681890
ace2transcription factor Ace2 Negative GeneticPMID:22681890
xap5xap-5-like protein Positive GeneticPMID:24957674
rok1ATP-dependent RNA helicase Rok1 (predicted) Positive GeneticPMID:22681890
sre2membrane-tethered transcription factor Sre2 Negative GeneticPMID:21504829
Negative GeneticPMID:22681890
trt1telomerase reverse transcriptase 1 protein Trt1 Negative GeneticPMID:22681890
atg6beclin family protein, involved in autophagy Positive GeneticPMID:22681890
ask1DASH complex subunit Ask1 Negative GeneticPMID:22681890
rik1silencing protein Rik1 Negative GeneticPMID:22681890
SPBC29A3.09cAAA family ATPase Gcn20 (predicted) Negative GeneticPMID:22681890
dad2DASH complex subunit Dad2 Negative GeneticPMID:22681890
tma23ribosome biogenesis protein Tma23 (predicted) Positive GeneticPMID:22681890
mug154conserved fungal protein Negative GeneticPMID:22681890
dsk1SR protein-specific kinase Dsk1 Negative GeneticPMID:22681890
rsv2transcription factor Rsv2 Negative GeneticPMID:22681890
tom70mitochondrial TOM complex subunit Tom70 (predicted) Positive GeneticPMID:22681890
ypa1protein phosphatase type 2A regulator, PTPA family Ypa1 Positive GeneticPMID:22681890
hrr1Helicase Required for RNAi-mediated heterochromatin assembly Hrr1 Negative GeneticPMID:22681890
par1protein phosphatase regulatory subunit Par1 Negative GeneticPMID:22681890
spc34DASH complex subunit Spc34 Negative GeneticPMID:22681890
rpb7DNA-directed RNA polymerase complex II subunit Rpb7 Positive GeneticPMID:22681890
cph2Clr6 histone deacetylase associated PHD protein-2 Cph2 Positive GeneticPMID:22681890
bob1prefoldin subunit 5 (predicted) Positive GeneticPMID:22681890
reb1RNA polymerase I transcription termination factor/ RNA polymerase II transcription factor Reb1 Positive GeneticPMID:22681890
res1MBF transcription factor complex subunit Res1 Negative GeneticPMID:22681890
prw1Clr6 histone deacetylase complex subunit Prw1 Negative GeneticPMID:22681890
dcr1dicer Negative GeneticPMID:22681890
elp2elongator complex subunit Elp2 (predicted) Positive GeneticPMID:22681890
fft3SMARCAD1 family ATP-dependent DNA helicase Fft3 Positive GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPBC685.06 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC685.06 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC685.06 BioGRID Interaction Datasets
Expression Viewer SPBC685.06 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC685.06 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC685.06 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC685.06 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC685.06 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC685.06 Transcriptome Viewer (Bähler Lab)
Cyclebase SPBC685.06 Cell Cycle Data
GEO SPBC685.06 GEO profiles
PInt SPBC685.06 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC685.06 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC685.06 Fission yeast phenotypic data & analysis
SPD / RIKEN13/13A11Orfeome Localization Data
UniProtKB/SwissProtQ9Y7L840S ribosomal protein S0-A
ModBaseQ9Y7L8Database of comparative protein structure models
STRINGQ9Y7L8Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59614040S ribosomal protein S0A
RefSeq mRNANM_001022058972h- 40S ribosomal protein S0A (rps001), mRNA
European Nucleotide ArchiveCAB39363.1ENA Protein Mapping
UniParcUPI0000134B8DUniProt Archive

Literature for rps001

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014