SPBC83.16c

Synonyms ChromosomeII
Productconserved eukaryotic protein Gene Start1541448
Feature Typeprotein coding Gene End1538636
Name Description CDS Start1540492
Characterisation Statusconserved_unknown CDS End1538801

Ensembl Gene Location
SPBC83.12 SPNCRNA.1440 SPBC83.13 rfc5 SPBC83.15 > SPBC83.16c < SPBC83.19c SPNCRNA.352 SPBC83.17 fic1 SPNCRNA.1441 atf1
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
115414481538636

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF10300 Pfam Outer membrane protein, IML2, mitochondrial/Tetratricopeptide repeat protein 39 17 474 452.1 3
TMHMM tmhmm Double transmembrane domain 103 124 0.78645 1312
TMHMM tmhmm Double transmembrane domain 175 197 0.66229 1312
TMHMM tmhmm Double transmembrane domain 218 237 0.96623 1312

Sequence Feature

Term IDDescriptionSourceAll Genes
SO:0000073protein transmembrane helicesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000073

Protein Properties

Ave. residue weight 112.76 Da
Charge 8.50
Isoelectric point 7.74
Molecular weight 63.48 kDa
Number of residues 563
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusISS SGD:S000001726GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
IDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year reference
GO:0005737cytoplasmISS SGD:S000001726GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005737
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829

Species Distribution

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DescriptionSourceAll Genes
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096

Manually Curated Orthologs

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SpeciesGeneDescription


External References

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Database Identifier Description
NBRP SPBC83.16c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC83.16c Retrieval of eukaryotic orthologs
BioGrid SPBC83.16c BioGRID Interaction Datasets
Bähler Lab SPBC83.16c Cell Cycle Expression Profile
Bähler Lab SPBC83.16c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC83.16c Pheromone response/mating expression profiles
Bähler Lab SPBC83.16c Environmental stress expression profiles
Bähler Lab SPBC83.16c Bähler Lab Transcriptome Viewer
Cyclebase SPBC83.16c Cell Cycle Data
Entrez Gene SPBC83.16c Link to Entrez Gene
SPD / RIKEN35/35C08Orfeome Localization Data
UniProtKB/SwissProtO94699Mitochondrial outer membrane protein C83.16c
ArrayExpressO94699Link to ArrayExpress
RefSeq PeptideNP_595648conserved eukaryotic protein
RefSeq mRNANM_001021542972h- conserved eukaryotic protein (SPBC83.16c), mRNA
European Nucleotide ArchiveCU329671ENA EMBL mapping
European Nucleotide ArchiveCAB36878ENA Protein Mapping
UniParcUPI000006C277UniProt Archive

Literature for SPBC83.16c

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Search: UK PMC or PubMed