rpl803 (SPBC839.04)


Gene Standard Namerpl803 Characterisation Statusbiological_role_inferred
Systematic IDSPBC839.04 Feature Typeprotein coding
Synonymsrpk5-b, rpkD4, rpl8-3, SPBC24E9.04 Name Description
Product60S ribosomal protein L8 (predicted) Product Size253aa, 27.10 kDa
Genomic Location Chromosome II, 601209-602186 (978nt); CDS:601281-602042 (762nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
rRNA binding55
Annotation ExtensionEvidenceWith/FromReference
structural constituent of ribosome255
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation465
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosol2314
Annotation ExtensionEvidenceWith/FromReference
cytosolic large ribosomal subunit83
Annotation ExtensionEvidenceWith/FromReference
nucleus2696
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term NameAlleleExpressionCount
sensitive to bortezomibrpl803ΔNull256
viable vegetative cell populationrpl803ΔNull3809

Cell Phenotype

Term NameAlleleExpressionCount
viable vegetative cell with normal cell morphologyrpl803ΔNull3094
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons601209..602186
mRNA601209..602186
5' UTR601209..601280PMID:21511999
CDS601281..602042
3' UTR602043..602186PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00181 Pfam IPR022666 Ribosomal Proteins L2, RNA binding domain 15 89 4
PF03947 Pfam IPR022669 Ribosomal protein L2, C-terminal 96 228 4
PS00467 Prosite Patterns IPR022671 Ribosomal protein L2, conserved site 196 207 4
PTHR13691:SF16 HMMPANTHER 1 253 3
PTHR13691 HMMPANTHER IPR002171 Ribosomal protein L2 1 253 4
2.40.50.140 Gene3D IPR012340 Nucleic acid-binding, OB-fold 1 85 48
4.10.950.10 Gene3D IPR014726 Ribosomal protein L2, domain 3 169 243 4
2.30.30.30 Gene3D IPR014722 Ribosomal protein L2 domain 2 89 168 13
SSF50104 SuperFamily IPR008991 Translation protein SH3-like domain 98 244 16
SSF50249 SuperFamily IPR012340 Nucleic acid-binding, OB-fold 2 96 57
PIRSF002158 PIRSF IPR002171 Ribosomal protein L2 1 251 3

View domain organization at Pfam

Protein Properties

Ave. residue weight 107.12 Da
Charge 29.50
Isoelectric point 11.45
Molecular weight 27.10 kDa
Number of residues 253
Sequence
Gene Expression

Quantitative Gene Expression

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
52during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
8during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4603
conserved in eukaryotes4514
conserved in bacteria1001
conserved in metazoa3424
conserved in vertebrates3399
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured byair1zinc knuckle TRAMP complex subunit Air1 Affinity Capture-MSPMID:20403971
affinity captured bycid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
affinity captured bynak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
External References
Database Identifier Description
NBRP SPBC839.04 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC839.04 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBC839.04 BioGRID Interaction Datasets
Expression Viewer SPBC839.04 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBC839.04 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBC839.04 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBC839.04 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBC839.04 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBC839.04 Transcriptome Viewer (Bähler Lab)
GEO SPBC839.04 GEO profiles
PInt SPBC839.04 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBC839.04 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBC839.04 Fission yeast phenotypic data & analysis
Cyclebase SPBC839.04.1 Cell Cycle Data
SPD / RIKEN09/09D05Orfeome Localization Data
UniProtKB/SwissProtP0809360S ribosomal protein L2
ModBaseP08093Database of comparative protein structure models
STRINGP08093Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59524460S ribosomal protein L2
RefSeq mRNANM_001021150972h- 60S ribosomal protein L2 (rpl803), mRNA
European Nucleotide ArchiveBAA87149.1ENA Protein Mapping
European Nucleotide ArchiveCAA28710.1ENA Protein Mapping
European Nucleotide ArchiveCAA34428.1ENA Protein Mapping
European Nucleotide ArchiveCAA35971.1ENA Protein Mapping
European Nucleotide ArchiveCAA91960.1ENA Protein Mapping
European Nucleotide ArchiveCAB10155.1ENA Protein Mapping
European Nucleotide ArchiveCAB46697.1ENA Protein Mapping
UniParcUPI0000133ED3UniProt Archive

Literature for rpl803

Search: Europe PMC or PubMed

Release Version: PomBase:26_53 - 27 May 2015