SPBC887.01

Gene Standard NameUnassigned ChromosomeII
Systematic IDSPBC887.01 Gene Start3540097
Synonyms Gene End3540887
Productacireductone dioxygenase family (predicted) Gene Length791
Feature Typeprotein coding CDS Start3540222
Name Description CDS End3540758
Characterisation Statusbiological_role_inferred CDS Length537

Ensembl Gene Location
  1. rsv2
  2. htd2
  3. new19
  4. rpr2
  5. cnp1
  6. SPBC1105.18c
  7. SPBC887.01
  8. SPBC887.02
  9. SPNCRNA.1613
  10. noc3
  11. lub1
Fission Yeast Phenotype Ontology

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPBC887.01delta (deletion)deletionPMID:20473289
GO Molecular Function

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0005506iron ion bindingIEAMF_03154GO_REF:0000020
GO:0010309acireductone dioxygenase [iron(II)-requiring] activityIEAMF_03154GO_REF:0000020
GO Biological Process

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0019509L-methionine salvage from methylthioadenosineISMIPR004313GO_REF:0000024
GO Cellular Component

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusISOSGD:S000004611GO_REF:0000024
IDAPMID:16823372
GO:0005737cytoplasmISOSGD:S000004611GO_REF:0000024
GO:0005829cytosolIDAPMID:16823372
Transcript
Contact Curators
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
135400973540887

References

Region Start End Reference
three_prime_UTR35407593540887PMID:21511999
three_prime_UTR35407593540887PMID:21511999
five_prime_UTR35400973540221PMID:21511999
Protein Features
Contact Curators

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF03079 IPR004313 Pfam Acireductone dioxygenase ARD family 2 151 1
G3DSA:2.60.120.10 IPR014710 Gene3D 3 174 6
SSF51182 IPR011051 SuperFamily 10 164 4
PTHR23418:SF0 hmmpanther 1 177 1
PTHR23418 IPR004313 hmmpanther Acireductone dioxygenase ARD family 1 177 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 117.62 Da
Charge -4.00
Isoelectric point 5.59
Molecular weight 20.94 kDa
Number of residues 178
Sequence
Contact Curators
Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencePECO:0000014,
PECO:0000005		population_wide22090.94PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide7031.99PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.5PMID:23101633
experimental evidencePECO:0000014,
PECO:0000005		population_wide4PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

Contact Curators
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
cbf11CBF1/Su(H)/LAG-1 family transcription factor Cbf11 Affinity Capture-MSPMID:22540037
Contact Curators
External References
Database Identifier Description
NBRP SPBC887.01 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC887.01 Retrieval of eukaryotic orthologs
BioGrid SPBC887.01 BioGRID Interaction Datasets
Bähler Lab SPBC887.01 Cell Cycle Expression Profile
Bähler Lab SPBC887.01 Meiosis/Sporulation Expression Profies
Bähler Lab SPBC887.01 Pheromone response/mating expression profiles
Bähler Lab SPBC887.01 Environmental stress expression profiles
Bähler Lab SPBC887.01 Bähler Lab Transcriptome Viewer
Cyclebase SPBC887.01 Cell Cycle Data
PInt SPBC887.01 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC887.01 Entrez Gene
EntrezGene2541231acireductone dioxygenase family
Uniprot_genenameADI1
WikiGene2541231acireductone dioxygenase family
UniProtKB/SwissProtO942861,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
ModBaseO94286Database of comparative protein structure models
Pfam Protein DomainsO94286Pfam Domain Arrangement
RefSeq PeptideNP_596475acireductone dioxygenase family
RefSeq mRNANM_001022395972h- acireductone dioxygenase family (SPBC887.01), mRNA
European Nucleotide ArchiveCAA21886ENA Protein Mapping
SPD / RIKEN42/42C05Orfeome Localization Data
UniParcUPI000006A3E7UniProt Archive

Literature for SPBC887.01
Contact Curators

Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013