SPBC8D2.16c

Synonyms ChromosomeII
ProductDUF171 family protein Gene Start1389186
Feature Typeprotein coding Gene End1386312
Name Description CDS Start1388737
Characterisation Statusconserved_unknown CDS End1387747

Ensembl Gene Location
SPBC8D2.12c sed5 shq1 lip5 > SPBC8D2.16c < SPBC8D2.17 SPBC8D2.18c sec31 mde3
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
113891861388612
213885681386312

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF02598 Pfam Putative RNA methyltransferase 17 306 225.7 1
75217 Superfamily 13 173 83 2

Protein Properties

Ave. residue weight 112.76 Da
Charge 6.50
Isoelectric point 8.55
Molecular weight 35.52 kDa
Number of residues 315
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusISS SGD:S000004927GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
IDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year reference
GO:0005730nucleolusISS SGD:S000003515GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005730
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829

Species Distribution

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DescriptionSourceAll Genes
conserved in ArchaeaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000130
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095

Manually Curated Orthologs

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SpeciesGeneDescription

Interactions

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Genetic Interactions from BioGRID

Gene Feature Evidence Source
set3histone lysine methyltransferase Set3 Positive Genetic
SPAC637.06alpha-1,2-galactosyltransferase (predicted) Positive Genetic
spc34DASH complex subunit Spc34 Positive Genetic
scs7sphingosine hydroxylase Scs7 Negative Genetic


External References

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Database Identifier Description
NBRP SPBC8D2.16c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC8D2.16c Retrieval of eukaryotic orthologs
BioGrid SPBC8D2.16c BioGRID Interaction Datasets
Bähler Lab SPBC8D2.16c Cell Cycle Expression Profile
Bähler Lab SPBC8D2.16c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC8D2.16c Pheromone response/mating expression profiles
Bähler Lab SPBC8D2.16c Environmental stress expression profiles
Bähler Lab SPBC8D2.16c Bähler Lab Transcriptome Viewer
Cyclebase SPBC8D2.16c Cell Cycle Data
Entrez Gene SPBC8D2.16c Link to Entrez Gene
SPD / RIKEN32/32C06Orfeome Localization Data
UniProtKB/SwissProtO13641Uncharacterized protein C8D2.16c
ArrayExpressO13641Link to ArrayExpress
RefSeq PeptideNP_595578DUF171 family protein
RefSeq mRNANM_001021473972h- DUF171 family protein (SPBC8D2.16c), mRNA
European Nucleotide ArchiveAB004537ENA EMBL mapping
European Nucleotide ArchiveCU329671ENA EMBL mapping
European Nucleotide ArchiveBAA21429ENA Protein Mapping
European Nucleotide ArchiveCAA17831ENA Protein Mapping
UniParcUPI0000069766UniProt Archive

Literature for SPBC8D2.16c

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Search: UK PMC or PubMed