naa38 (SPBC947.03c)

Gene Standard Namenaa38 ChromosomeII
Systematic IDSPBC947.03c Gene Start676629
Synonymsmak31 Gene End679324
ProductNatC N-acetyltransferase non catalytic Sm-like domain subunit Naa38 (predicted) Gene Length2696
Feature Typeprotein coding CDS Start676629
Name DescriptionN-Alpha-Acetyltransferase CDS End677127
Characterisation Statusbiological_role_inferred CDS Length499

Ensembl Gene Location
  1. SPBC947.04
  2. SPNCRNA.1379
  3. SPNCRNA.321
  4. SPNCRNA.322
  5. naa38
  6. apl2
  7. alf1
  8. SPNCRNA.323
  9. dps1
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopynaa38delta (deletion)deletionPMID:20473289
GO Biological Process

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0017196N-terminal peptidyl-methionine acetylationICGO:0031417GO_REF:0000001
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005737cytoplasmISOSGD:S000000614GO_REF:0000024
GO:0005783endoplasmic reticulumIDAPMID:16823372
GO:0005789endoplasmic reticulum membraneIEASL-0097GO_REF:0000039
GO:0016021integral to membraneIEAUniProtKB:KW-0812GO_REF:0000037
GO:0031417NatC complexISOSGD:S000000614GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1676629676908
2677057679324

References

Region Start End Reference
three_prime_UTR677128679324PMID:21511999
three_prime_UTR677128679324PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF01423 IPR001163 Pfam Ribonucleoprotein LSM domain 54 113 16
TMhelix TMHMM 13 35 955
G3DSA:2.30.30.100 Gene3D 51 114 16
SSF50182 IPR010920 SuperFamily 51 114 19
PTHR21617 hmmpanther 1 114 1
PTHR21617:SF0 hmmpanther 1 114 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.02 Da
Charge 1.50
Isoelectric point 7.44
Molecular weight 13.23 kDa
Number of residues 116
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1.8PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.45PMID:23101633
Warning
DescriptionQualifierReference
previously annotated as dubious
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
alp13MRG family Clr6 histone deacetylase complex subunit Alp13 Negative GeneticPMID:22681890
duo1DASH complex subunit Duo1 Negative GeneticPMID:22681890
dad4DASH complex subunit Dad4 Negative GeneticPMID:22681890
sep1forkhead transcription factor Sep1 Negative GeneticPMID:22681890
dam1DASH complex subunit Dam1 Negative GeneticPMID:22681890
nup40nucleoporin Nup40 Negative GeneticPMID:22681890
fft3fun thirty related protein Fft3 Positive GeneticPMID:22681890
SPAC17H9.13cglutamate 5-kinase (predicted) Negative GeneticPMID:22681890
spc34DASH complex subunit Spc34 Negative GeneticPMID:22681890
apc10anaphase-promoting complex subunit Apc10 Negative GeneticPMID:22681890
dbr1RNA lariat debranching enzyme Dbr1 Negative GeneticPMID:22681890
vrp1verprolin Positive GeneticPMID:22681890
SPBC16H5.13WD repeat protein, human WDR7 ortholog Negative GeneticPMID:22681890
dad2DASH complex subunit Dad2 Negative GeneticPMID:22681890
arp42SWI/SNF and RSC complex subunit Arp42 Negative GeneticPMID:22681890
reb1RNA polymerase I transcription termination factor Reb1 Negative GeneticPMID:22681890
gcn5SAGA complex histone acetyltransferase catalytic subunit Gcn5 Positive GeneticPMID:22681890
mug80cyclin Clg1 (predicted) Negative GeneticPMID:22681890
rad1checkpoint clamp complex protein Rad1 Negative GeneticPMID:22681890
ace2transcription factor Ace2 Negative GeneticPMID:22681890
sap114U2 snRNP subunit Sap114 Positive GeneticPMID:22681890
sfp1transcription factor Sfp1 (predicted) Negative GeneticPMID:22681890
spc19DASH complex subunit Spc19 Negative GeneticPMID:22681890
pca1metacaspase Pca1 Negative GeneticPMID:22681890
par1protein phosphatase regulatory subunit Par1 Negative GeneticPMID:22681890
rpb7DNA-directed RNA polymerase complex II subunit Rpb7 Negative GeneticPMID:22681890
SPBC31F10.10czf-MYND type zinc finger protein Negative GeneticPMID:22681890
dad3DASH complex subunit Dad3 Negative GeneticPMID:22681890
hrq1RecQ type DNA helicase Hrq1 (predicted) Negative GeneticPMID:22681890
pef1Pho85/PhoA-like cyclin-dependent kinase Pef1 Negative GeneticPMID:22681890
ssu72phosphoric ester hydrolase Ssu72 (predicted) Negative GeneticPMID:22681890
rnc1RNA-binding protein that suppresses calcineurin deletion Rnc1 Negative GeneticPMID:22681890
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External References
Database Identifier Description
NBRP SPBC947.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC947.03c Retrieval of eukaryotic orthologs
BioGrid SPBC947.03c BioGRID Interaction Datasets
Bähler Lab SPBC947.03c Cell Cycle Expression Profile
Bähler Lab SPBC947.03c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC947.03c Pheromone response/mating expression profiles
Bähler Lab SPBC947.03c Environmental stress expression profiles
Bähler Lab SPBC947.03c Bähler Lab Transcriptome Viewer
Cyclebase SPBC947.03c Cell Cycle Data
PInt SPBC947.03c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC947.03c Entrez Gene
WikiGene2541272Sm domain protein
EntrezGene2541272Sm domain protein
SPD / RIKEN01/01D11Orfeome Localization Data
UniProtKB/SwissProtO43080Uncharacterized protein C947.03c
ModBaseO43080Database of comparative protein structure models
Pfam Protein DomainsO43080Pfam Domain Arrangement
RefSeq PeptideNP_595273Sm domain protein
RefSeq mRNANM_001021180972h- Sm domain protein (SPBC947.03c), mRNA
European Nucleotide ArchiveCAA17031ENA Protein Mapping
UniParcUPI0001B062BDUniProt Archive

Literature for naa38
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013