Tf2-9 (SPBC9B6.02c)

Gene Standard NameTf2-9 ChromosomeII
Systematic IDSPBC9B6.02c Gene Start1816780
SynonymsSPBC9B6.02 Gene End1812748
Productretrotransposable element/transposon Tf2-type Gene Length4033
Feature Typeprotein coding CDS Start1816749
Name Description CDS End1812748
Characterisation Statustransposon CDS Length4002

Ensembl Gene Location
  1. atg14
  2. SPBC18H10.20c
  3. SPNCRNA.1466
  4. Tf2-9
  5. SPBC9B6.03
  6. tuf1
  7. lsm3
GO Molecular Function

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0003964RNA-directed DNA polymerase activityNASGO_REF:0000051
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005737cytoplasmIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
118167801812748

References

Region Start End Reference
five_prime_UTR18167801816750PMID:21511999
five_prime_UTR18167801816750PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00665 IPR001584 Pfam Integrase, catalytic core 981 1094 13
PF00078 IPR000477 Pfam Reverse transcriptase 455 615 15
PF12382 IPR024648 Pfam Peptidase A2E, retrotransposon 219 355 13
PS50994 IPR001584 Prosite Profiles Integrase, catalytic core 979 1138 13
PS50878 IPR000477 Prosite Profiles Reverse transcriptase 436 615 15
PS00141 IPR001969 Prosite Patterns Peptidase aspartic, active site 268 279 14
G3DSA:3.30.70.270 Gene3D 536 617 16
G3DSA:3.10.10.10 Gene3D 404 535 13
G3DSA:3.30.420.10 Gene3D 979 1131 31
SSF50630 IPR021109 SuperFamily 266 332 15
SSF53098 IPR012337 SuperFamily 976 1135 34
SSF56672 SuperFamily 377 818 24
Coil ncoils Rabaptin coiled-coil domain 582 603 974
PTHR10178 hmmpanther 6 1267 13
PTHR10178:SF14 hmmpanther 6 1267 13

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000992Tf2-type transposonTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000992

Protein Properties

Ave. residue weight 116.23 Da
Charge 54.50
Isoelectric point 9.57
Molecular weight 154.93 kDa
Number of residues 1333
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000005,
PECO:0000014		population_widePMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.47PMID:23101633
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External References
Database Identifier Description
NBRP SPBC9B6.02c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBC9B6.02c Retrieval of eukaryotic orthologs
BioGrid SPBC9B6.02c BioGRID Interaction Datasets
Bähler Lab SPBC9B6.02c Cell Cycle Expression Profile
Bähler Lab SPBC9B6.02c Meiosis/Sporulation Expression Profies
Bähler Lab SPBC9B6.02c Pheromone response/mating expression profiles
Bähler Lab SPBC9B6.02c Environmental stress expression profiles
Bähler Lab SPBC9B6.02c Bähler Lab Transcriptome Viewer
Cyclebase SPBC9B6.02c Cell Cycle Data
PInt SPBC9B6.02c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBC9B6.02c Entrez Gene
EntrezGene2542672retrotransposable element
EntrezGene2542797retrotransposable element
EntrezGene2543673retrotransposable element
EntrezGene3361218retrotransposable element
Uniprot_genenameSPAC1F2.03
Uniprot_genenameTF2-1
WikiGene2542672retrotransposable element
WikiGene2542797retrotransposable element
WikiGene2543673retrotransposable element
WikiGene3361218retrotransposable element
SPD / RIKEN34/34B01Orfeome Localization Data
UniProtKB/SwissProtQ05654Retrotransposable element Tf2 155 kDa protein type 1
ModBaseQ05654Database of comparative protein structure models
Pfam Protein DomainsQ05654Pfam Domain Arrangement
RefSeq PeptideNP_001018800retrotransposable element
RefSeq PeptideNP_593347retrotransposable element
RefSeq PeptideNP_593385retrotransposable element
RefSeq PeptideNP_594156retrotransposable element
RefSeq mRNANM_001018779972h- retrotransposable element (Tf2-1), mRNA
RefSeq mRNANM_001018817972h- retrotransposable element (Tf2-2), mRNA
RefSeq mRNANM_001019580972h- retrotransposable element (Tf2-4), mRNA
RefSeq mRNANM_001021644972h- retrotransposable element (Tf2-9), mRNA
Uniprot/SPTREMBLQ9UTF1Tf2 type transposon
MEROPSA02.051
European Nucleotide ArchiveAAA91215ENA Protein Mapping
European Nucleotide ArchiveCAA93236ENA Protein Mapping
European Nucleotide ArchiveCAB11682ENA Protein Mapping
European Nucleotide ArchiveCAB42363ENA Protein Mapping
European Nucleotide ArchiveCAB57422ENA Protein Mapping
European Nucleotide ArchiveCAB58169ENA Protein Mapping
European Nucleotide ArchiveCAB59613ENA Protein Mapping
European Nucleotide ArchiveCAB60245ENA Protein Mapping
European Nucleotide ArchiveCAB83007ENA Protein Mapping
European Nucleotide ArchiveCAD27466ENA Protein Mapping
UniParcUPI0000135298UniProt Archive

Literature for Tf2-9
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013