sdh7 (SPBP23A10.03c)

Gene Standard Namesdh7 Characterisation Statusbiological role inferred
Systematic IDSPBP23A10.03c Feature Typeprotein coding
Synonyms Name Description
Productmitochondrial respiratory chain complex II assembly ACN9 family protein Sdh7 (predicted) Product Size115aa, 13.64 kDa
Genomic Location Chromosome II, 2000861-1999257 (1605nt); CDS:2000774-2000312 (463nt)

Ensembl Gene Location
GO Biological Process
Term NameCount
mitochondrial respiratory chain complex II assembly4
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
mitochondrial intermembrane space30
Annotation ExtensionEvidenceWith/FromReference
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
viable vegetative cell populationsdh7Δ3840

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell with normal cell morphologysdh7Δ3100
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons2000861..2000475, 2000359..1999257
5' UTR2000861..2000775PMID:21511999
CDS2000774..2000475, 2000359..2000312
3' UTR2000311..1999257PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF05347 Pfam IPR008011 Complex 1 LYR protein 17 70 5
PTHR13137:SF6 HMMPANTHER 1 110 1
PTHR13137 HMMPANTHER IPR008381 ACN9 1 110 1

View domain organization at Pfam

Term IDTerm NameReferenceCount
PBO:0000237ACN9 familyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000237

Protein Properties

Ave. residue weight 118.62 Da
Charge 4.00
Codon Adaptation Index 0.27
Isoelectric point 9.33
Molecular weight 13.64 kDa
Number of residues 115
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for sdh7 (SPBP23A10.03c)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1370.11during GO:0072690PECO:0000014,
population wideexperimental evidencePMID:23101633
1684.55during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.6during GO:0072690PECO:0000014,
population wideexperimental evidencePMID:23101633
0.41during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
population wideexperimental evidencePMID:23101633
protein coding overlap with adjacent gene17
Taxonomic Conservation
predominantly single copy (one to one)3092
conserved in fungi4606
conserved in eukaryotes4516
conserved in metazoa3424
conserved in vertebrates3399
conserved in eukaryotes only2506

Manually curated orthologous groups


Orthologs in Compara

External References
Database Identifier Description
NBRP SPBP23A10.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBP23A10.03c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBP23A10.03c BioGRID Interaction Datasets
Expression Viewer SPBP23A10.03c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBP23A10.03c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBP23A10.03c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBP23A10.03c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBP23A10.03c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBP23A10.03c Transcriptome Viewer (Bähler Lab)
GEO SPBP23A10.03c GEO profiles
PInt SPBP23A10.03c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBP23A10.03c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBP23A10.03c Fission yeast phenotypic data & analysis
Cyclebase SPBP23A10.03c.1 Cell Cycle Data
SPD / RIKEN04/04B12Orfeome Localization Data
UniProtKB/SwissProtQ9P7Y2Succinate dehydrogenase assembly factor 3, mitochondrial
ModBaseQ9P7Y2Database of comparative protein structure models
STRINGQ9P7Y2Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_595815mitochondrial ACN9 family protein (predicted)
RefSeq mRNANM_001021719972h- mitochondrial ACN9 family protein (predicted) (SPBP23A10.03c), mRNA

Literature for sdh7

Search: Europe PMC or PubMed

Release Version: PomBase:30_59 - 12 Apr 2016