SPBP23A10.03c


Gene Standard NameUnassigned Characterisation Statusbiological_role_inferred
Systematic IDSPBP23A10.03c Feature Typeprotein coding
Synonyms Name Description
Productmitochondrial ACN9 family protein (predicted) Product Size115aa, 13.64 kDa
Genomic Location Chromosome II, 2000861-1999257 (1605nt); CDS:2000774-2000312 (463nt)

Ensembl Gene Location
GO Biological Process
Term NameCount
regulation of gluconeogenesis11
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
mitochondrial intermembrane space26
Annotation ExtensionEvidenceWith/FromReference
mitochondrion758
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopySPBP23A10.03cΔNullPECO:0000005, PECO:0000137PMID:236978063759
MicroscopySPBP23A10.03cΔNullPMID:20473289

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3089
penetrance FYPO_EXT:0000001MicroscopySPBP23A10.03cΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
120008612000475
220003591999257

UTRs

Region Coordinates Reference
five_prime_UTR2000861..2000775PMID:21511999
three_prime_UTR2000311..1999257PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF05347 Pfam IPR008011 Complex 1 LYR protein 17 70 4
PTHR13137:SF6 HMMPANTHER 1 115 1
PTHR13137 HMMPANTHER IPR008381 ACN9 1 115 1

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceCount
PBO:0000237ACN9 familyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000237

Protein Properties

Ave. residue weight 118.62 Da
Charge 4.00
Isoelectric point 9.33
Molecular weight 13.64 kDa
Number of residues 115
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1370.11during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
1684.55during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.6during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
0.41during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
protein coding overlap with adjacent gene17
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi4600
conserved in eukaryotes4514
conserved in metazoa3425
conserved in vertebrates3400
conserved in eukaryotes only2497
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPBP23A10.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBP23A10.03c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBP23A10.03c BioGRID Interaction Datasets
Expression Viewer SPBP23A10.03c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBP23A10.03c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBP23A10.03c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBP23A10.03c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBP23A10.03c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBP23A10.03c Transcriptome Viewer (Bähler Lab)
Cyclebase SPBP23A10.03c Cell Cycle Data
GEO SPBP23A10.03c GEO profiles
PInt SPBP23A10.03c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBP23A10.03c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBP23A10.03c Fission yeast phenotypic data & analysis
SPD / RIKEN04/04B12Orfeome Localization Data
UniProtKB/SwissProtQ9P7Y2Acetate non-utilizing protein 9, mitochondrial
ModBaseQ9P7Y2Database of comparative protein structure models
STRINGQ9P7Y2Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_595815mitochondrial ACN9 family protein (predicted)
RefSeq mRNANM_001021719972h- mitochondrial ACN9 family protein (predicted) (SPBP23A10.03c), mRNA
European Nucleotide ArchiveCAB66431.1ENA Protein Mapping
UniParcUPI000006B33CUniProt Archive

Literature for SPBP23A10.03c

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014