SPBP23A10.03c

Gene Standard NameUnassigned ChromosomeII
Systematic IDSPBP23A10.03c Gene Start2000861
Synonyms Gene End1999257
Productmitochondrial ACN9 family protein (predicted) Gene Length1605
Feature Typeprotein coding CDS Start2000774
Name Description CDS End2000312
Characterisation Statusbiological_role_inferred CDS Length463

Ensembl Gene Location
  1. cct3
  2. SPBC1A4.11c
  3. SPBC1A4.09
  4. pmc1
  5. SPBP23A10.03c
  6. pkr1
  7. apc2
  8. ssr4
  9. SPBP23A10.17
  10. SPBP23A10.06
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPBP23A10.03cdelta (deletion)deletionPMID:20473289
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0006111regulation of gluconeogenesisISOSGD:S000002919GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005739mitochondrionIDAPMID:16823372
GO:0005758mitochondrial intermembrane spaceISOSGD:S000002919GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
120008612000475
220003591999257

References

Region Start End Reference
three_prime_UTR20003111999257PMID:21511999
five_prime_UTR20008612000775PMID:21511999
three_prime_UTR20003111999257PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF05347 IPR008011 Pfam Complex 1 LYR protein 17 69 5
PTHR13137 IPR008381 hmmpanther ACN9 7 113 1
PTHR13137:SF6 hmmpanther 7 113 1

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000237ACN9 familyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000237

Protein Properties

Ave. residue weight 118.62 Da
Charge 4.00
Isoelectric point 9.33
Molecular weight 13.64 kDa
Number of residues 115
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencePECO:0000014,
PECO:0000005		population_wide1370.11PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1684.55PMID:23101633
RNA levelexperimental evidencePECO:0000014,
PECO:0000005		population_wide1.6PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.41PMID:23101633
Warning
DescriptionQualifierReference
protein coding overlap with adjacent gene
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPBP23A10.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBP23A10.03c Retrieval of eukaryotic orthologs
BioGrid SPBP23A10.03c BioGRID Interaction Datasets
Bähler Lab SPBP23A10.03c Cell Cycle Expression Profile
Bähler Lab SPBP23A10.03c Meiosis/Sporulation Expression Profies
Bähler Lab SPBP23A10.03c Pheromone response/mating expression profiles
Bähler Lab SPBP23A10.03c Environmental stress expression profiles
Bähler Lab SPBP23A10.03c Bähler Lab Transcriptome Viewer
Cyclebase SPBP23A10.03c Cell Cycle Data
PInt SPBP23A10.03c Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBP23A10.03c Entrez Gene
EntrezGene2541309ACN9 family mitochondrial protein
Uniprot_genenameACN9
WikiGene2541309ACN9 family mitochondrial protein
UniProtKB/SwissProtQ9P7Y2Acetate non-utilizing protein 9, mitochondrial
ModBaseQ9P7Y2Database of comparative protein structure models
Pfam Protein DomainsQ9P7Y2Pfam Domain Arrangement
RefSeq PeptideNP_595815ACN9 family mitochondrial protein
RefSeq mRNANM_001021719972h- ACN9 family mitochondrial protein (SPBP23A10.03c), mRNA
European Nucleotide ArchiveCAB66431ENA Protein Mapping
SPD / RIKEN04/04B12Orfeome Localization Data
UniParcUPI000006B33CUniProt Archive

Literature for SPBP23A10.03c
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013