sdh7 (SPBP23A10.03c)


Gene Standard Namesdh7 Characterisation Statusbiological_role_inferred
Systematic IDSPBP23A10.03c Feature Typeprotein coding
Synonyms Name Description
Productmitochondrial respiratory chain complex II assembly ACN9 family protein Sdh7 (predicted) Product Size115aa, 13.64 kDa
Genomic Location Chromosome II, 2000861-1999257 (1605nt); CDS:2000774-2000312 (463nt)

Ensembl Gene Location
GO Biological Process
Term NameCount
gluconeogenesis18
Annotation ExtensionEvidenceWith/FromReference
mitochondrial respiratory chain complex II assembly4
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
mitochondrial intermembrane space30
Annotation ExtensionEvidenceWith/FromReference
mitochondrion761
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term NameAlleleExpressionCount
viable vegetative cell populationsdh7ΔNull3795

Cell Phenotype

Term NameAlleleExpressionCount
viable vegetative cell with normal cell morphologysdh7ΔNull3093
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons2000861..2000475, 2000359..1999257
mRNA2000861..1999257
5' UTR2000861..2000775PMID:21511999
CDS2000774..2000475, 2000359..2000312
3' UTR2000311..1999257PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF05347 Pfam IPR008011 Complex 1 LYR protein 17 70 4
PTHR13137 HMMPANTHER IPR008381 ACN9 1 110 1
PTHR13137:SF6 HMMPANTHER 1 110 1

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceCount
PBO:0000237ACN9 familyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000237

Protein Properties

Ave. residue weight 118.62 Da
Charge 4.00
Isoelectric point 9.33
Molecular weight 13.64 kDa
Number of residues 115
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1370.11during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
1684.55during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.6during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
0.41during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
protein coding overlap with adjacent gene17
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi4604
conserved in eukaryotes4516
conserved in metazoa3430
conserved in vertebrates3405
conserved in eukaryotes only2502
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPBP23A10.03c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBP23A10.03c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBP23A10.03c BioGRID Interaction Datasets
Expression Viewer SPBP23A10.03c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBP23A10.03c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBP23A10.03c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBP23A10.03c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBP23A10.03c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBP23A10.03c Transcriptome Viewer (Bähler Lab)
GEO SPBP23A10.03c GEO profiles
PInt SPBP23A10.03c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBP23A10.03c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBP23A10.03c Fission yeast phenotypic data & analysis
Cyclebase SPBP23A10.03c.1 Cell Cycle Data
SPD / RIKEN04/04B12Orfeome Localization Data
UniProtKB/SwissProtQ9P7Y2Succinate dehydrogenase assembly factor 3, mitochondrial
ModBaseQ9P7Y2Database of comparative protein structure models
STRINGQ9P7Y2Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_595815mitochondrial ACN9 family protein (predicted)
RefSeq mRNANM_001021719972h- mitochondrial ACN9 family protein (predicted) (SPBP23A10.03c), mRNA
European Nucleotide ArchiveCAB66431.1ENA Protein Mapping
UniParcUPI000006B33CUniProt Archive

Literature for sdh7

Search: Europe PMC or PubMed

Release Version: PomBase:26_51 - 07 Apr 2015