air1 (SPBP35G2.08c)


Gene Standard Nameair1 Characterisation Statuspublished
Systematic IDSPBP35G2.08c Feature Typeprotein coding
Synonyms Name Description
Productzinc knuckle TRAMP complex subunit Air1 Product Size315aa, 35.55 kDa
Genomic Location Chromosome II, 980870-979358 (1513nt); CDS:980580-979529 (1052nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
zinc ion binding248
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process4
Annotation ExtensionEvidenceWith/FromReference
rRNA catabolic process17
Annotation ExtensionEvidenceWith/FromReference
snoRNA catabolic process2
Annotation ExtensionEvidenceWith/FromReference
snRNA catabolic process1
Annotation ExtensionEvidenceWith/FromReference
tRNA catabolic process16
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
nucleolus359
Annotation ExtensionEvidenceWith/FromReference
nucleus2697
Annotation ExtensionEvidenceWith/FromReference
TRAMP complex4
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term NameAlleleExpressionCount
sensitive to 4-nitroquinoline N-oxideair1ΔNull159
viable vegetative cell populationair1ΔNull3783

Cell Phenotype

Term NameAlleleExpressionCount
decreased chromatin silencingair1ΔNull53
viable vegetative cell with normal cell morphologyair1ΔNull3092
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1980870980359
2980309980208
3980152979358

UTRs

Region Coordinates Reference
five_prime_UTR980870..980581PMID:21511999
three_prime_UTR979528..979358PMID:21511999
exon980580..980359,980309..980208,980152..979529
mRNA980870..979358
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00098 Pfam IPR001878 Zinc finger, CCHC-type 90 106 4
SM00343 SMART IPR001878 Zinc finger, CCHC-type 152 168 5
SM00343 SMART IPR001878 Zinc finger, CCHC-type 108 125 5
SM00343 SMART IPR001878 Zinc finger, CCHC-type 90 106 5
SM00343 SMART IPR001878 Zinc finger, CCHC-type 190 206 5
SM00343 SMART IPR001878 Zinc finger, CCHC-type 128 144 5
PS50158 Prosite Profiles IPR001878 Zinc finger, CCHC-type 91 105 7
PS50158 Prosite Profiles IPR001878 Zinc finger, CCHC-type 128 144 7
PTHR23002:SF49 HMMPANTHER 68 281 1
PTHR23002 HMMPANTHER 68 281 3
4.10.60.10 Gene3D IPR001878 Zinc finger, CCHC-type 86 137 5
4.10.60.10 Gene3D IPR001878 Zinc finger, CCHC-type 138 167 5
SSF57756 SuperFamily IPR001878 Zinc finger, CCHC-type 84 125 5
SSF57756 SuperFamily IPR001878 Zinc finger, CCHC-type 127 167 5
PIRSF018162 PIRSF IPR016713 Poly(A) polymerase complex, Air1/2 7 315 1
Coil ncoils Rabaptin coiled-coil domain 232 253 968

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceCount
PBO:0000137zinc finger proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000137
PBO:0000623zf-CCHC type (zinc knuckle)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000623

Protein Properties

Ave. residue weight 112.84 Da
Charge 9.00
Isoelectric point 7.75
Molecular weight 35.55 kDa
Number of residues 315
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serine 1670
present during cellular response to thiabendazoleS22
present during cellular response to thiabendazole, mitotic M phaseS16
S12, S16
present during mitotic M phaseS12
Annotation ExtensionEvidenceResidueReference
experimental evidence S12 PMID:24763107
present during mitotic M phase experimental evidence S12 PMID:21712547
experimental evidence S16 PMID:24763107
present during mitotic M phase experimental evidence S16 PMID:21712547
present during cellular response to thiabendazole IDA S16 PMID:18257517
present during cellular response to thiabendazole IDA S22 PMID:18257517
phosphorylated residue 1923
Annotation ExtensionEvidenceResidueReference
NAS PMID:18257517
IDA PMID:19547744
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
2564during GO:0072690PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
482.78during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
2.6during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
0.49during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Warning
DescriptionQualifierReferenceCount
gene structure updated PMID:21511999432
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi4604
conserved in eukaryotes4516
conserved in metazoa3432
conserved in vertebrates3407
conserved in eukaryotes only2503
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity capturesadh1alcohol dehydrogenase Adh1 Affinity Capture-MSPMID:20403971
affinity capturesair1zinc knuckle TRAMP complex subunit Air1 Affinity Capture-MSPMID:20403971
affinity captured bycid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:21436456
affinity capturescid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
affinity captured bycid14poly(A) polymerase Cid14 Affinity Capture-WesternPMID:20403971
affinity captured bycid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
affinity capturescid14poly(A) polymerase Cid14 Affinity Capture-WesternPMID:20403971
affinity captureseno101enolase (predicted) Affinity Capture-MSPMID:20403971
affinity capturesfba1fructose-bisphosphate aldolase Fba1 Affinity Capture-MSPMID:20403971
affinity captureshhf1histone H4 h4.1 Affinity Capture-MSPMID:20403971
affinity captureshhf2histone H4 h4.2 Affinity Capture-MSPMID:20403971
affinity captureshhf3histone H4 h4.3 Affinity Capture-MSPMID:20403971
affinity captureshtb1histone H2B Htb1 Affinity Capture-MSPMID:20403971
affinity captured bymlo3RNA binding protein Mlo3 Affinity Capture-MSPMID:21436456
affinity capturesmlo3RNA binding protein Mlo3 Affinity Capture-MSPMID:20403971
affinity capturesmtr4ATP-dependent RNA helicase, TRAMP complex subunit Mtr4 Affinity Capture-MSPMID:20403971
affinity capturesmtr4ATP-dependent RNA helicase, TRAMP complex subunit Mtr4 Affinity Capture-WesternPMID:20403971
affinity capturespgk1phosphoglycerate kinase Pgk1 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl110160S ribosomal protein L11 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl110260S ribosomal protein L11 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl1360S ribosomal protein L13 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl1560S ribosomal protein L15 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl170260S ribosomal protein L17 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl180160S ribosomal protein L18 Affinity Capture-MSPMID:20403971
affinity capturesrpl180260S ribosomal protein L18 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl200160S ribosomal protein L20a (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl200260S ribosomal protein L20 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl210160S ribosomal protein L21 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl210260S ribosomal protein L21 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl2260S ribosomal protein L22 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl230160S ribosomal protein L23 Affinity Capture-MSPMID:20403971
affinity capturesrpl230260S ribosomal protein L23 Affinity Capture-MSPMID:20403971
affinity capturesrpl240160S ribosomal protein L24 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl250160S ribosomal protein L25 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl2660S ribosomal protein L26 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl270160S ribosomal protein L27 Affinity Capture-MSPMID:20403971
affinity capturesrpl280160S ribosomal protein L27/L28 Affinity Capture-MSPMID:20403971
affinity capturesrpl280260S ribosomal protein L27/L28 Affinity Capture-MSPMID:20403971
affinity capturesrpl30160S ribosomal protein L3 Affinity Capture-MSPMID:20403971
affinity capturesrpl3160S ribosomal protein L31 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl320160S ribosomal protein L32 Affinity Capture-MSPMID:20403971
affinity capturesrpl340160S ribosomal protein L34 Affinity Capture-MSPMID:20403971
affinity capturesrpl3560S ribosomal protein L35 Affinity Capture-MSPMID:20403971
affinity capturesrpl360160S ribosomal protein L36 Affinity Capture-MSPMID:20403971
affinity capturesrpl40160S ribosomal protein L4 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl40260S ribosomal protein L4 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl430160S ribosomal protein L37a (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl4460S ribosomal protein L28/L44 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl660S ribosomal protein L6 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl70260S ribosomal protein L7 Affinity Capture-MSPMID:20403971
affinity capturesrpl860S ribosomal protein L7a/L8 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl80160S ribosomal protein L8 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl80260S ribosomal protein L8 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpl80360S ribosomal protein L8 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrpp060S acidic ribosomal protein Rpp0 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrps10240S ribosomal protein S3a (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrps110140S ribosomal protein S11 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrps110240S ribosomal protein S11 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrps1340S ribosomal protein S13 Affinity Capture-MSPMID:20403971
affinity capturesrps170140S ribosomal protein S17 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrps180140S ribosomal protein S18 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrps180240S ribosomal protein S18 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrps220140S ribosomal protein S15a (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrps220240S ribosomal protein S15a (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrps250240S ribosomal protein S25 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrps740S ribosomal protein S7 (predicted) Affinity Capture-MSPMID:20403971
affinity capturesrps80140S ribosomal protein S8 (predicted) Affinity Capture-MSPMID:20403971
affinity capturestdh1glyceraldehyde-3-phosphate dehydrogenase Tdh1 Affinity Capture-MSPMID:20403971
affinity capturestef101translation elongation factor EF-1 alpha Ef1a-a Affinity Capture-MSPMID:20403971
Genetic Interactions

Source: BioGRID

View these interactions in esyN

Gene Product Evidence Reference
negative genetic interaction withalm1medial ring protein Alm1 Negative GeneticPMID:22681890
negative genetic interaction withalp14TOG/XMAP14 family protein Alp14 Negative GeneticPMID:18818364
positive genetic interaction withapl5AP-3 adaptor complex subunit Apl5 (predicted) Positive GeneticPMID:22681890
negative genetic interaction withapq12nuclear membrane organization protein Apq12 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withapt1adenine phosphoribosyltransferase (APRT) (predicted) Negative GeneticPMID:22681890
negative genetic interaction witharf6ADP-ribosylation factor, Arf family Arf6 Negative GeneticPMID:22681890
negative genetic interaction witharg12argininosuccinate synthase Arg12 Negative GeneticPMID:22681890
negative genetic interaction witharp42SWI/SNF and RSC complex subunit Arp42 Negative GeneticPMID:18818364
negative genetic interaction witharp42SWI/SNF and RSC complex subunit Arp42 Negative GeneticPMID:22681890
negative genetic interaction witharp8actin-like protein, Ino80 complex subunit Arp8 Negative GeneticPMID:18818364
negative genetic interaction withase1antiparallel microtubule cross-linking factor Ase1 Negative GeneticPMID:18818364
negative genetic interaction withash2Ash2-trithorax family protein Negative GeneticPMID:18818364
negative genetic interaction withasp1inositol hexakisphosphate kinase/inositol pyrophosphate synthase (predicted) Negative GeneticPMID:22681890
negative genetic interaction withatp11mitochondrial F1-ATPase chaperone Atp11 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withatp14F1-ATPase subunit H (predicted) Negative GeneticPMID:22681890
positive genetic interaction withaut12autophagy associated protein Aut12 (predicted) Positive GeneticPMID:18818364
negative genetic interaction withbdc1bromodomain containing protein 1, Bdc1 Negative GeneticPMID:18818364
negative genetic interaction withbdc1bromodomain containing protein 1, Bdc1 Negative GeneticPMID:22681890
negative genetic interaction withbob1prefoldin subunit 5 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withbob1prefoldin subunit 5 (predicted) Negative GeneticPMID:22681890
positive genetic interaction withbun107WD repeat protein, human WDR48 family Bun107 Positive GeneticPMID:22681890
positive genetic interaction withcaf1CCR4-Not complex CAF1 family ribonuclease subunit Caf1 Positive GeneticPMID:18818364
positive genetic interaction withcay1cactin, spliceosome complex subunit (predicted) Positive GeneticPMID:18818364
negative genetic interaction withcbp1CENP-B homolog Negative GeneticPMID:18818364
negative genetic interaction withccr4CCR4-Not complex subunit Ccr4 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withclr4histone H3 lysine methyltransferase Clr4 Negative GeneticPMID:18818364
negative genetic interaction withclr4histone H3 lysine methyltransferase Clr4 Negative GeneticPMID:22681890
negative genetic interaction withcph1Clr6 histone deacetylase associated PHD protein-1 Cph1 Negative GeneticPMID:18818364
negative genetic interaction withcph1Clr6 histone deacetylase associated PHD protein-1 Cph1 Negative GeneticPMID:22681890
negative genetic interaction withcsn1COP9/signalosome complex subunit Csn1 Negative GeneticPMID:18818364
positive genetic interaction withcwf21complexed with Cdc5 protein Cwf21 Positive GeneticPMID:18818364
negative genetic interaction withdcd1deoxycytidylate deaminase (predicted) Negative GeneticPMID:22681890
negative genetic interaction withddb1damaged DNA binding protein Ddb1 Negative GeneticPMID:18818364
negative genetic interaction withdep1Sds3-like family protein Dep1 Negative GeneticPMID:22681890
negative genetic interaction withdlc2dynein light chain Dlc2 (predicted) Negative GeneticPMID:18818364
positive genetic interaction withelp6elongator complex subunit Elp6 (predicted) Positive GeneticPMID:18818364
positive genetic interaction witheme1Holliday junction resolvase subunit Eme1 Positive GeneticPMID:18818364
negative genetic interaction withepe1Jmjc domain chromatin associated protein Epe1 Negative GeneticPMID:18818364
negative genetic interaction withest1telomerase regulator Est1 Negative GeneticPMID:18818364
positive genetic interaction withfkbp39FKBP-type peptidyl-prolyl cis-trans isomerase (predicted) Positive GeneticPMID:18818364
negative genetic interaction withgar2nucleolar protein required for rRNA processing Negative GeneticPMID:22681890
positive genetic interaction withgcd10tRNA (m1A) methyltransferase Gcd10 (predicted) Positive GeneticPMID:22681890
negative genetic interaction withgim3prefoldin subunit 4, Gim3 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withgim3prefoldin subunit 4, Gim3 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withgit3G-protein coupled receptor Git3 Negative GeneticPMID:22681890
positive genetic interaction withgmh5alpha-1,2-galactosyltransferase (predicted) Positive GeneticPMID:18818364
positive genetic interaction withgmh5alpha-1,2-galactosyltransferase (predicted) Positive GeneticPMID:22681890
negative genetic interaction withhos2histone deacetylase (class I) Hos2 Negative GeneticPMID:18818364
negative genetic interaction withhta1histone H2A alpha Negative GeneticPMID:18818364
positive genetic interaction withklp3kinesin-like protein Klp3 Positive GeneticPMID:18818364
negative genetic interaction withlem2LEM domain protein Heh1/Lem2 Negative GeneticPMID:22681890
negative genetic interaction withlub1WD repeat protein Lub1 Negative GeneticPMID:18818364
negative genetic interaction withmcs2TFIIH complex cyclin Mcs2 Negative GeneticPMID:22681890
negative genetic interaction withmga2IPT/TIG ankyrin repeat containing transcription regulator of fatty acid biosynthesis (predicted) Negative GeneticPMID:18818364
negative genetic interaction withmms19Dos2 silencing complex subunit Mms19 Negative GeneticPMID:18818364
negative genetic interaction withmms19Dos2 silencing complex subunit Mms19 Negative GeneticPMID:22681890
negative genetic interaction withmoe1translation initiation factor eIF3d Moe1 Negative GeneticPMID:22681890
negative genetic interaction withmpc2mitochondrial pyruvate transmembrane transporter Mpc2 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withmpp6nuclear exosome-associated RNA binding protein Mpp6 Negative GeneticPMID:22681890
positive genetic interaction withmsc1multi-copy suppressor of Chk1 Positive GeneticPMID:18818364
positive genetic interaction withmsn5karyopherin (predicted) Positive GeneticPMID:18818364
negative genetic interaction withmug154conserved fungal protein Negative GeneticPMID:22681890
positive genetic interaction withmug20Schizosaccharomyces specific protein Mug20 Positive GeneticPMID:22681890
negative genetic interaction withnap1nucleosome assembly protein Nap1 Negative GeneticPMID:18818364
negative genetic interaction withnap1nucleosome assembly protein Nap1 Negative GeneticPMID:22681890
positive genetic interaction withnot2CCR4-Not complex subunit Not2 (predicted) Positive GeneticPMID:18818364
positive genetic interaction withnup124nucleoporin Nup124 Positive GeneticPMID:22681890
rescued bypab2poly(A) binding protein Pab2 Phenotypic SuppressionPMID:22965128
negative genetic interaction withpac10prefoldin subunit 3 Pac10 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withpac10prefoldin subunit 3 Pac10 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withpar1protein phosphatase regulatory subunit Par1 Negative GeneticPMID:18818364
negative genetic interaction withpds5mitotic cohesin-associated protein Pds5 Negative GeneticPMID:18818364
negative genetic interaction withpht1histone H2A variant H2A.Z, Pht1 Negative GeneticPMID:18818364
negative genetic interaction withpnk1DNA kinase/phosphatase Pnk1 Negative GeneticPMID:18818364
negative genetic interaction withpnk1DNA kinase/phosphatase Pnk1 Negative GeneticPMID:22681890
negative genetic interaction withpob3FACT complex subunit Pob3 Negative GeneticPMID:18818364
negative genetic interaction withpom1DYRK family protein kinase Pom1 Negative GeneticPMID:18818364
positive genetic interaction withrad55RecA family ATPase Rad55/Rhp55 Positive GeneticPMID:22681890
negative genetic interaction withraf1CLRC ubiquitin E3 ligase complex specificiy factor Raf1/Dos1 Negative GeneticPMID:22681890
negative genetic interaction withraf2Rik1-associated factor Raf2 Negative GeneticPMID:18818364
negative genetic interaction withrik1silencing protein Rik1 Negative GeneticPMID:18818364
negative genetic interaction withrik1silencing protein Rik1 Negative GeneticPMID:22681890
negative genetic interaction withrnc1RNA-binding protein that suppresses calcineurin deletion Rnc1 Negative GeneticPMID:22681890
positive genetic interaction withrpa12DNA-directed RNA polymerase complex I subunit Rpa12 Positive GeneticPMID:18818364
positive genetic interaction withrpa12DNA-directed RNA polymerase complex I subunit Rpa12 Positive GeneticPMID:22681890
negative genetic interaction withrpb9DNA-directed RNA polymerase II complex subunit Rpb9 Negative GeneticPMID:18818364
negative genetic interaction withrpl210260S ribosomal protein L21 (predicted) Negative GeneticPMID:22681890
positive genetic interaction withrpl280160S ribosomal protein L27/L28 Positive GeneticPMID:22681890
negative genetic interaction withrsc1RSC complex subunit Rsc1 Negative GeneticPMID:18818364
positive genetic interaction withrsv2transcription factor Rsv2 Positive GeneticPMID:18818364
positive genetic interaction withsck2serine/threonine protein kinase Sck2 Positive GeneticPMID:24463365
negative genetic interaction withscs7sphingosine hydroxylase Scs7 Negative GeneticPMID:18818364
positive genetic interaction withsec28coatomer epsilon subunit (predicted) Positive GeneticPMID:18818364
negative genetic interaction withser2phosphoserine phosphatase Ser2 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withset1histone lysine methyltransferase Set1 Negative GeneticPMID:18818364
negative genetic interaction withset3histone lysine methyltransferase Set3 Negative GeneticPMID:18818364
negative genetic interaction withsgf73SAGA complex subunit Sgf73 Negative GeneticPMID:22681890
negative genetic interaction withsnf5SWI/SNF complex subunit Snf5 Negative GeneticPMID:18818364
positive genetic interaction withsnt2Lid2 complex subunit Snt2 Positive GeneticPMID:18818364
positive genetic interaction withsnt2Lid2 complex subunit Snt2 Positive GeneticPMID:22681890
positive genetic interaction withSPAC1952.06cspliceosomal complex subunit (predicted) Positive GeneticPMID:18818364
negative genetic interaction withSPAC26H5.04vacuolar import and degradation protein Vid28 (predicted) Negative GeneticPMID:18818364
positive genetic interaction withSPAC30C2.04cofactor for methionyl-and glutamyl-tRNA synthetases (predicted) Positive GeneticPMID:22681890
positive genetic interaction withSPAC694.02DEAD/DEAH box helicase Positive GeneticPMID:22681890
negative genetic interaction withSPAC9.07cGTPase Rbg1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPAP8A3.13cVid24 family protein (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPBC106.13ubiquitin ligase complex subunit, involved in proteasome-dependent catabolite inactivation of FBPase (predicted) Negative GeneticPMID:18818364
negative genetic interaction withSPBC106.13ubiquitin ligase complex subunit, involved in proteasome-dependent catabolite inactivation of FBPase (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPBC1289.14adducin (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPBC1348.02S. pombe specific 5Tm protein family Negative GeneticPMID:22681890
negative genetic interaction withSPBC16C6.03cribosome assembly protein (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPBC1778.05chuman LAMTOR2 ortholog Negative GeneticPMID:22681890
positive genetic interaction withSPBC215.06chuman LYAR homolog Positive GeneticPMID:22681890
negative genetic interaction withSPBC25H2.15SSU-rRNA maturation protein Tsr4 homolog 1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withSPBC31F10.10czf-MYND type zinc finger protein Negative GeneticPMID:18818364
negative genetic interaction withSPBC365.16conserved protein Negative GeneticPMID:22681890
positive genetic interaction withSPBC36B7.08cnucleosome assembly protein (predicted) Positive GeneticPMID:18818364
negative genetic interaction withSPCC594.04csteroid oxidoreductase superfamily protein (predicted) Negative GeneticPMID:22681890
negative genetic interaction withspf1Set1C PHD Finger protein Spf1 Negative GeneticPMID:18818364
negative genetic interaction withspp27RNA polymerase I upstream activation factor complex subunit Spp27 Negative GeneticPMID:22681890
positive genetic interaction withssu72phosphoric ester hydrolase Ssu72 (predicted) Positive GeneticPMID:18818364
negative genetic interaction withswd1Set1C complex subunit Swd1 Negative GeneticPMID:18818364
negative genetic interaction withswd2Set1C complex subunit Swd2.1 Negative GeneticPMID:18818364
positive genetic interaction withswd22WD repeat protein (predicted) Positive GeneticPMID:18818364
negative genetic interaction withswi2Swi5 complex subunit Swi2 Negative GeneticPMID:18818364
negative genetic interaction withtal1transaldolase (predicted) Negative GeneticPMID:22681890
negative genetic interaction withtco89TORC1 subunit Tco89 Negative GeneticPMID:22681890
negative genetic interaction withtea2kinesin-like protein Tea2 Negative GeneticPMID:18818364
negative genetic interaction withtip1CLIP170 family protein Tip1 Negative GeneticPMID:18818364
negative genetic interaction withtma20RNA-binding protein Tma20 (predicted) Negative GeneticPMID:18818364
positive genetic interaction withtom70mitochondrial TOM complex subunit Tom70 (predicted) Positive GeneticPMID:22681890
negative genetic interaction withtpp1trehalose-6-phosphate phosphatase Tpp1 Negative GeneticPMID:22681890
negative genetic interaction withtrs130TRAPP complex subunit Trs130 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withuba42thiosulfate sulfurtransferase, URM1 activating enzyme E1-type Uba42 (predicted) Negative GeneticPMID:22681890
positive genetic interaction withubc15ubiquitin conjugating enzyme E2 Ubc15 Positive GeneticPMID:18818364
negative genetic interaction withubp16ubiquitin C-terminal hydrolase Ubp16 Negative GeneticPMID:22681890
positive genetic interaction withubp2ubiquitin C-terminal hydrolase Ubp2 Positive GeneticPMID:18818364
negative genetic interaction withubp3ubiquitin C-terminal hydrolase Ubp3 Negative GeneticPMID:18818364
positive genetic interaction withubp7ubiquitin C-terminal hydrolase Ubp7 Positive GeneticPMID:18818364
negative genetic interaction withubp8SAGA complex ubiquitin C-terminal hydrolase Ubp8 Negative GeneticPMID:22681890
negative genetic interaction withulp2SUMO deconjugating cysteine peptidase Ulp2 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withutp16U3 snoRNP-associated protein Utp16 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withvph2endoplasmic reticulum membrane protein involved in assembly of the V-ATPase (predicted) Negative GeneticPMID:18818364
positive genetic interaction withvps38phophatidylinositol 3-kinase complex subunit Vps38 Positive GeneticPMID:22681890
negative genetic interaction withyaf9YEATS family histone acetyltransferase subunit Yaf9 Negative GeneticPMID:18818364
negative genetic interaction withyke2prefoldin subunit 6, Yke2 (predicted) Negative GeneticPMID:18818364
negative genetic interaction withyke2prefoldin subunit 6, Yke2 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withzds1zds family protein phosphatase type A regulator Zds1 (predicted) Negative GeneticPMID:18818364
External References
Database Identifier Description
NBRP SPBP35G2.08c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBP35G2.08c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBP35G2.08c BioGRID Interaction Datasets
Expression Viewer SPBP35G2.08c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBP35G2.08c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBP35G2.08c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBP35G2.08c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBP35G2.08c Polyadenylation Viewer (Gullerova lab)
pombeTV SPBP35G2.08c Transcriptome Viewer (Bähler Lab)
Cyclebase SPBP35G2.08c Cell Cycle Data
GEO SPBP35G2.08c GEO profiles
PInt SPBP35G2.08c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBP35G2.08c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBP35G2.08c Fission yeast phenotypic data & analysis
SPD / RIKEN15/15H06Orfeome Localization Data
UniProtKB/SwissProtQ9P795Protein air1
ModBaseQ9P795Database of comparative protein structure models
STRINGQ9P795Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_595383zinc knuckle TRAMP complex subunit Air1
RefSeq mRNANM_001021290972h- zinc knuckle TRAMP complex subunit Air1 (air1), mRNA
European Nucleotide ArchiveCAB87370.2ENA Protein Mapping
UniParcUPI000228F389UniProt Archive

Literature for air1

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Release Version: PomBase:25_49 - 02 Feb 2015