rps2302 (SPBP4H10.13)

Gene Standard Namerps2302 ChromosomeII
Systematic IDSPBP4H10.13 Gene Start2897046
Synonymsrps23-2 Gene End2897633
Product40S ribosomal protein S23 (predicted) Gene Length588
Feature Typeprotein coding CDS Start2897100
Name Description CDS End2897531
Characterisation Statusbiological_role_inferred CDS Length432

Ensembl Gene Location
  1. SPNCRNA.1560
  2. rsv1
  3. SPBP4H10.10
  4. lcf2
  5. SPBP4H10.12
  6. rps2302
  7. SPBP4H10.14c
  8. SPNCRNA.1561
  9. SPNCRNA.411
  10. SPNCRNA.1562
  11. SPBP4H10.15
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopyrps2302delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0003735structural constituent of ribosomeISOSGD:S000006336GO_REF:0000024
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0002181cytoplasmic translationNASGO_REF:0000051
GO:0006412translationISOSGD:S000006336GO_REF:0000024
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIDAPMID:16823372
GO:0005730nucleolusIDAPMID:16823372
GO:0022627cytosolic small ribosomal subunitISOSGD:S000006336GO_REF:0000024
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
128970462897633

References

Region Start End Reference
three_prime_UTR28975322897633PMID:21511999
three_prime_UTR28975322897633PMID:21511999
five_prime_UTR28970462897099PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF00164 IPR006032 Pfam Ribosomal protein S12/S23 9 142 3
PS00055 IPR006032 Prosite Patterns Ribosomal protein S12/S23 60 67 3
G3DSA:2.40.50.140 IPR012340 Gene3D 20 141 47
SSF50249 IPR016027 SuperFamily 21 141 57
PIRSF002133 IPR006032 PIRSF Ribosomal protein S12/S23 6 143 3
PTHR11652 IPR006032 hmmpanther Ribosomal protein S12/S23 1 142 3
TIGR00982 IPR005680 tigrfam Ribosomal protein S23, eukaryotic/archaeal 6 142 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 109.48 Da
Charge 20.50
Isoelectric point 11.05
Molecular weight 15.66 kDa
Number of residues 143
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide70184.55PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide49130.55PMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide67PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide8.6PMID:23101633
Species Distribution
DescriptionQualifierReference
conserved in fungi
conserved in eukaryotes
conserved in bacteria
conserved in metazoa
conserved in vertebrates
Manually curated orthologous groups
SpeciesGeneDescription

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Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
lrp1leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
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External References
Database Identifier Description
NBRP SPBP4H10.13 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBP4H10.13 Retrieval of eukaryotic orthologs
BioGrid SPBP4H10.13 BioGRID Interaction Datasets
Bähler Lab SPBP4H10.13 Cell Cycle Expression Profile
Bähler Lab SPBP4H10.13 Meiosis/Sporulation Expression Profies
Bähler Lab SPBP4H10.13 Pheromone response/mating expression profiles
Bähler Lab SPBP4H10.13 Environmental stress expression profiles
Bähler Lab SPBP4H10.13 Bähler Lab Transcriptome Viewer
Cyclebase SPBP4H10.13 Cell Cycle Data
PInt SPBP4H10.13 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBP4H10.13 Entrez Gene
EntrezGene254136940S ribosomal protein S23
EntrezGene254201240S ribosomal protein S23
Uniprot_genenameRPS23A
WikiGene254136940S ribosomal protein S23
WikiGene254201240S ribosomal protein S23
SPD / RIKEN39/39G11Orfeome Localization Data
UniProtKB/SwissProtP7905740S ribosomal protein S23
ModBaseP79057Database of comparative protein structure models
Pfam Protein DomainsP79057Pfam Domain Arrangement
RefSeq PeptideNP_59618740S ribosomal protein S23
RefSeq mRNANM_001022106972h- 40S ribosomal protein S23 (rps2302), mRNA
European Nucleotide ArchiveBAA19233ENA Protein Mapping
European Nucleotide ArchiveCAB11155ENA Protein Mapping
European Nucleotide ArchiveCAB83171ENA Protein Mapping
UniParcUPI0000134E9AUniProt Archive

Literature for rps2302
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013