rps2302 (SPBP4H10.13)

Gene Standard Namerps2302 Characterisation Statusbiological_role_inferred
Systematic IDSPBP4H10.13 Feature Typeprotein coding
Synonymsrps23-2 Name Description
Product40S ribosomal protein S23 (predicted) Product Size143aa, 15.66 kDa
Genomic Location Chromosome II, 2897046-2897633 (588nt); CDS:2897100-2897531 (432nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0003735structural constituent of ribosomeISOSGD:S000006336GO_REF:0000024255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0002181cytoplasmic translationNASGO_REF:0000051446
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0022627cytosolic small ribosomal subunitISOSGD:S000006336GO_REF:000002464
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopyrps2302ΔNullPMID:204732893751
Microscopyrps2302ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3088
penetrance FYPO_EXT:0000001Microscopyrps2302ΔNullPECO:0000005, PECO:0000137PMID:23697806
Ensembl transcript structure with UTRs, exons and introns


Exon Start End
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00164 Pfam IPR006032 Ribosomal protein S12/S23 9 142 3
PS00055 Prosite Patterns IPR006032 Ribosomal protein S12/S23 60 67 3
PTHR11652:SF3 HMMPANTHER 1 142 2
PTHR11652 HMMPANTHER IPR006032 Ribosomal protein S12/S23 1 142 3 Gene3D IPR012340 Nucleic acid-binding, OB-fold 20 141 48
SSF50249 SuperFamily IPR012340 Nucleic acid-binding, OB-fold 21 141 57
PIRSF002133 PIRSF IPR006032 Ribosomal protein S12/S23 6 143 3
TIGR00982 tigrfam IPR005680 Ribosomal protein S23, eukaryotic/archaeal 6 142 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 109.48 Da
Charge 20.50
Isoelectric point 11.05
Molecular weight 15.66 kDa
Number of residues 143
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
70184.55during GO:0072690PECO:0000005,
population_wideexperimental evidencePMID:23101633
49130.55during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
67during GO:0072690PECO:0000005,
population_wideexperimental evidencePMID:23101633
8.6during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
population_wideexperimental evidencePMID:23101633
Species Distribution
conserved in fungi4599
conserved in eukaryotes4514
conserved in bacteria1002
conserved in metazoa3428
conserved in vertebrates3402

Manually curated orthologous groups


Orthologs in Compara

Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
epe1Jmjc domain chromatin associated protein Epe1 Affinity Capture-MSPMID:24013502
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
sog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
External References
Database Identifier Description
NBRP SPBP4H10.13 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBP4H10.13 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBP4H10.13 BioGRID Interaction Datasets
Expression Viewer SPBP4H10.13 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBP4H10.13 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBP4H10.13 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBP4H10.13 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBP4H10.13 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBP4H10.13 Transcriptome Viewer (Bähler Lab)
Cyclebase SPBP4H10.13 Cell Cycle Data
GEO SPBP4H10.13 GEO profiles
PInt SPBP4H10.13 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBP4H10.13 Peptides identified in tandem mass spectrometry proteomics experiments
SPD / RIKEN39/39G11Orfeome Localization Data
UniProtKB/SwissProtP7905740S ribosomal protein S23
ModBaseP79057Database of comparative protein structure models
STRINGP79057Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59618740S ribosomal protein S23
RefSeq mRNANM_001022106972h- 40S ribosomal protein S23 (rps2302), mRNA
European Nucleotide ArchiveAB001288ENA EMBL mapping
European Nucleotide ArchiveCAB11155.1ENA Protein Mapping
European Nucleotide ArchiveCAB83171.1ENA Protein Mapping
UniParcUPI0000134E9AUniProt Archive

Literature for rps2302

Search: Europe PMC or PubMed

Release Version: PomBase:23_46 - 30 Aug 2014