rps2302 (SPBP4H10.13)

Gene Standard Namerps2302 Characterisation Statusbiological role inferred
Systematic IDSPBP4H10.13 Feature Typeprotein coding
Synonymsrps23-2 Name Description
Product40S ribosomal protein S23 (predicted) Product Size143aa, 15.66 kDa
Genomic Location Chromosome II, 2897046-2897633 (588nt); CDS:2897100-2897531 (432nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome257
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation469
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosolic small ribosomal subunit64
Annotation ExtensionEvidenceWith/FromReference
Annotation ExtensionEvidenceWith/FromReference
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
slow vegetative cell population growthrps2302Δ367
viable vegetative cell populationrps2302Δ3850

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell with normal cell morphologyrps2302Δ3102
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
5' UTR2897046..2897099PMID:21511999
3' UTR2897532..2897633PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00164 Pfam IPR006032 Ribosomal protein S12/S23 9 142 3
PS00055 Prosite Patterns IPR006032 Ribosomal protein S12/S23 60 67 3
PTHR11652 HMMPANTHER IPR006032 Ribosomal protein S12/S23 1 143 3
PTHR11652:SF14 HMMPANTHER 1 143 2 Gene3D RecQ-mediated genome instability protein 2 20 141 48
SSF50249 SuperFamily IPR012340 Nucleic acid-binding, OB-fold 21 141 57
PIRSF002133 PIRSF IPR006032 Ribosomal protein S12/S23 16 143 2
TIGR00982 TIGRFAM IPR005680 Ribosomal protein S23, eukaryotic/archaeal 6 142 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 109.48 Da
Charge 20.50
Codon Adaptation Index 0.70
Isoelectric point 11.05
Molecular weight 15.66 kDa
Number of residues 143

Protein Modifications

Term NameResidueCount
ubiquitinylated lysineK28 512
Annotation ExtensionEvidenceResidueReference
mass spectrometry evidence K28 PMID:26412298
IDA PMID:26412298
Gene Expression

Quantitative Gene Expression

View graphical display of gene expression data for rps2302 (SPBP4H10.13)

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
70184.55during GO:0072690PECO:0000014,
population wideexperimental evidencePMID:23101633
49130.55during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
67during GO:0072690PECO:0000014,
population wideexperimental evidencePMID:23101633
8.6during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
conserved in fungi4607
conserved in eukaryotes4517
conserved in bacteria1005
conserved in metazoa3427
conserved in vertebrates3402

Manually curated orthologous groups


Orthologs in Compara

Physical Interactions

Source: BioGRID

Load genes that interact physically with SPBP4H10.13 into the Query Builder
View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bysog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
affinity captured bynak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
External References
Database Identifier Description
NBRP SPBP4H10.13 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBP4H10.13 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBP4H10.13 BioGRID Interaction Datasets
Expression Viewer SPBP4H10.13 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBP4H10.13 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBP4H10.13 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBP4H10.13 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBP4H10.13 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBP4H10.13 Transcriptome Viewer (Bähler Lab)
GEO SPBP4H10.13 GEO profiles
PInt SPBP4H10.13 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBP4H10.13 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBP4H10.13 Fission yeast phenotypic data & analysis
Cyclebase SPBP4H10.13.1 Cell Cycle Data
SPD / RIKEN39/39G11Orfeome Localization Data
UniProtKB/SwissProtP0CT7640S ribosomal protein S23-B
ModBaseP0CT76Database of comparative protein structure models
STRINGP0CT76Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59618740S ribosomal protein S23
RefSeq mRNANM_001022106972h- 40S ribosomal protein S23 (rps2302), mRNA
European Nucleotide ArchiveCAB83171.1ENA Protein Mapping
UniParcUPI0000134E9AUniProt Archive

Literature for rps2302

Search: Europe PMC or PubMed

Release Version: PomBase:30_61 - 12 Sep 2016