rps2302 (SPBP4H10.13)


Gene Standard Namerps2302 Characterisation Statusbiological_role_inferred
Systematic IDSPBP4H10.13 Feature Typeprotein coding
Synonymsrps23-2 Name Description
Product40S ribosomal protein S23 (predicted) Product Size143aa, 15.66 kDa
Genomic Location Chromosome II, 2897046-2897633 (588nt); CDS:2897100-2897531 (432nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome255
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation462
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
cytosolic small ribosomal subunit65
Annotation ExtensionEvidenceWith/FromReference
nucleolus361
Annotation ExtensionEvidenceWith/FromReference
nucleus2695
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term NameAlleleExpressionCount
slow vegetative cell population growthrps2302ΔNull327
viable vegetative cell populationrps2302ΔNull3809

Cell Phenotype

Term NameAlleleExpressionCount
viable vegetative cell with normal cell morphologyrps2302ΔNull3093
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons2897046..2897633
mRNA2897046..2897633
5' UTR2897046..2897099PMID:21511999
CDS2897100..2897531
3' UTR2897532..2897633PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00164 Pfam IPR006032 Ribosomal protein S12/S23 9 142 3
PS00055 Prosite Patterns IPR006032 Ribosomal protein S12/S23 60 67 3
PTHR11652 HMMPANTHER IPR006032 Ribosomal protein S12/S23 1 142 3
2.40.50.140 Gene3D IPR012340 Nucleic acid-binding, OB-fold 20 141 48
SSF50249 SuperFamily IPR012340 Nucleic acid-binding, OB-fold 21 141 57
PIRSF002133 PIRSF IPR006032 Ribosomal protein S12/S23 16 143 2
TIGR00982 tigrfam IPR005680 Ribosomal protein S23, eukaryotic/archaeal 6 142 2

View domain organization at Pfam

Protein Properties

Ave. residue weight 109.48 Da
Charge 20.50
Isoelectric point 11.05
Molecular weight 15.66 kDa
Number of residues 143
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
70184.55during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
49130.55during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
67during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
8.6during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4603
conserved in eukaryotes4514
conserved in bacteria1001
conserved in metazoa3424
conserved in vertebrates3399
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bynak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
affinity captured bysog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
External References
Database Identifier Description
NBRP SPBP4H10.13 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBP4H10.13 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPBP4H10.13 BioGRID Interaction Datasets
Expression Viewer SPBP4H10.13 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPBP4H10.13 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPBP4H10.13 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPBP4H10.13 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPBP4H10.13 Polyadenylation Viewer (Gullerova lab)
pombeTV SPBP4H10.13 Transcriptome Viewer (Bähler Lab)
GEO SPBP4H10.13 GEO profiles
PInt SPBP4H10.13 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPBP4H10.13 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPBP4H10.13 Fission yeast phenotypic data & analysis
Cyclebase SPBP4H10.13.1 Cell Cycle Data
SPD / RIKEN39/39G11Orfeome Localization Data
UniProtKB/SwissProtP7905740S ribosomal protein S23
ModBaseP79057Database of comparative protein structure models
STRINGP79057Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_59618740S ribosomal protein S23
RefSeq mRNANM_001022106972h- 40S ribosomal protein S23 (rps2302), mRNA
European Nucleotide ArchiveAB001288ENA EMBL mapping
European Nucleotide ArchiveCAB11155.1ENA Protein Mapping
European Nucleotide ArchiveCAB83171.1ENA Protein Mapping
UniParcUPI0000134E9AUniProt Archive

Literature for rps2302

Search: Europe PMC or PubMed

Release Version: PomBase:26_52 - 11 May 2015