SPBPJ4664.05

Gene Standard NameUnassigned ChromosomeII
Systematic IDSPBPJ4664.05 Gene Start705788
Synonyms Gene End707245
Productconserved fungal protein Gene Length1458
Feature Typeprotein coding CDS Start705932
Name Description CDS End706666
Characterisation Statusconserved_unknown CDS Length735

Ensembl Gene Location
  1. SPBPJ4664.02
  2. SPNCRNA.1381
  3. mfm3
  4. SPBPJ4664.04
  5. SPBPJ4664.05
  6. gpt1
  7. rpn3
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPBPJ4664.05delta (deletion)deletionPMID:20473289
GO Cellular Component

Ontology Graph

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Term IDTerm NameEvidenceWith/FromReference
GO:0005783endoplasmic reticulumIDAPMID:16823372
GO:0005789endoplasmic reticulum membraneIEASL-0097GO_REF:0000039
GO:0016021integral to membraneIEAUniProtKB:KW-0812GO_REF:0000037
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1705788706077
2706141707245

References

Region Start End Reference
three_prime_UTR706667707245PMID:21511999
three_prime_UTR706667707245PMID:21511999
five_prime_UTR705788705931PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF04750 IPR006838 Pfam FAR-17a/AIG1-like protein 12 210 1
TMhelix TMHMM 191 213 955
TMhelix TMHMM 144 166 955
TMhelix TMHMM 13 30 955
TMhelix TMHMM 45 67 955
TMhelix TMHMM 80 102 955
PTHR10989 hmmpanther 2 222 1

View domain organization at Pfam

Sequence Ontology

Term IDTerm NameReference
SO:0000418signal_peptide
SO:0001812transmembrane_helix

Protein Properties

Ave. residue weight 113.05 Da
Charge 9.00
Isoelectric point 9.37
Molecular weight 25.21 kDa
Number of residues 223
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide1195.63PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide3.7PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.94PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi only
conserved in fungi
conserved in eukaryotes
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
tom70mitochondrial TOM complex subunit Tom70 (predicted) Positive GeneticPMID:22681890
SPBC725.05cnucleotide pyrophosphatase (predicted) Negative GeneticPMID:22681890
mug80cyclin Clg1 (predicted) Negative GeneticPMID:22681890
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External References
Database Identifier Description
NBRP SPBPJ4664.05 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPBPJ4664.05 Retrieval of eukaryotic orthologs
BioGrid SPBPJ4664.05 BioGRID Interaction Datasets
Bähler Lab SPBPJ4664.05 Cell Cycle Expression Profile
Bähler Lab SPBPJ4664.05 Meiosis/Sporulation Expression Profies
Bähler Lab SPBPJ4664.05 Pheromone response/mating expression profiles
Bähler Lab SPBPJ4664.05 Environmental stress expression profiles
Bähler Lab SPBPJ4664.05 Bähler Lab Transcriptome Viewer
Cyclebase SPBPJ4664.05 Cell Cycle Data
PInt SPBPJ4664.05 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPBPJ4664.05 Entrez Gene
WikiGene2541381conserved fungal protein
EntrezGene2541381conserved fungal protein
SPD / RIKEN41/41C09Orfeome Localization Data
UniProtKB/SwissProtQ96WV4UPF0641 membrane protein PJ4664.05
ModBaseQ96WV4Database of comparative protein structure models
Pfam Protein DomainsQ96WV4Pfam Domain Arrangement
RefSeq PeptideNP_595280conserved fungal protein
RefSeq mRNANM_001021187972h- conserved fungal protein (SPBPJ4664.05), mRNA
European Nucleotide ArchiveCAC38350ENA Protein Mapping
UniParcUPI0001B062BEUniProt Archive

Literature for SPBPJ4664.05
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013