SPCC1183.02

Gene Standard NameUnassigned ChromosomeIII
Systematic IDSPCC1183.02 Gene Start594963
Synonyms Gene End596054
Productglutathione S-transferase (predicted) Gene Length1092
Feature Typeprotein coding CDS Start595060
Name Description CDS End596002
Characterisation Statusconserved_unknown CDS Length943

Ensembl Gene Location
  1. SPCC1672.11c
  2. get4
  3. sec15
  4. SPNCRNA.1145
  5. SPCC1183.02
  6. fxn1
  7. pet127
  8. lig4
  9. ung1
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0001491viable vegetative cellMicroscopySPCC1183.02delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0004364glutathione transferase activityISMPFAM:PF02798GO_REF:0000001
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0002182cytoplasmic translational elongationNASGO_REF:0000051
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005829cytosolIDAPMID:16823372
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1594963595212
2595493596054

References

Region Start End Reference
five_prime_UTR594963595059PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF13417 Pfam 16 76 1
PF00043 IPR004046 Pfam Glutathione S-transferase, C-terminal 125 200 6
PS50404 IPR004045 Prosite Profiles Glutathione S-transferase, N-terminal 2 81 5
PS50405 IPR017933 Prosite Profiles Glutathione S-transferase/chloride channel, C-terminal 89 216 7
G3DSA:1.20.1050.10 IPR010987 Gene3D 82 208 10
G3DSA:3.40.30.10 IPR012336 Gene3D 1 79 36
SSF52833 IPR012336 SuperFamily 1 76 38
SSF47616 IPR010987 SuperFamily 80 208 12
PTHR11260 hmmpanther 3 207 6
PTHR11260:SF7 hmmpanther 3 207 2

View domain organization at Pfam

Manually Curated Family or Sub-families

Term IDTerm NameReferenceAll Genes
PBO:0000261thioredoxin familyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000261

Protein Properties

Ave. residue weight 115.93 Da
Charge 1.00
Isoelectric point 6.95
Molecular weight 25.50 kDa
Number of residues 220
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide42479.74PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide14170.9PMID:23101633
RNA levelexperimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide1PMID:23101633
experimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide6.6PMID:23101633
Species Distribution
DescriptionQualifierReference
faster evolving duplicate
conserved in fungi
conserved in eukaryotes
conserved in metazoa
conserved in vertebrates
conserved in eukaryotes only
Manually curated orthologous groups
SpeciesGeneDescription

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Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
ddb1damaged DNA binding protein Ddb1 Negative GeneticPMID:22681890
eso1sister chromatid cohesion protein/DNA polymerase eta Eso1 fusion protein Negative GeneticPMID:23050226
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
paa1protein phosphatase regulatory subunit Paa1 Affinity Capture-MSPMID:22119525
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External References
Database Identifier Description
NBRP SPCC1183.02 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC1183.02 Retrieval of eukaryotic orthologs
BioGrid SPCC1183.02 BioGRID Interaction Datasets
Bähler Lab SPCC1183.02 Cell Cycle Expression Profile
Bähler Lab SPCC1183.02 Meiosis/Sporulation Expression Profies
Bähler Lab SPCC1183.02 Pheromone response/mating expression profiles
Bähler Lab SPCC1183.02 Environmental stress expression profiles
Bähler Lab SPCC1183.02 Bähler Lab Transcriptome Viewer
Cyclebase SPCC1183.02 Cell Cycle Data
PInt SPCC1183.02 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPCC1183.02 Entrez Gene
SPD / RIKEN13/13C03Orfeome Localization Data
EntrezGene2539015glutathione S-transferase (predicted)
WikiGene2539015glutathione S-transferase (predicted)
UniProtKB/SwissProtO74830Putative glutathione S-transferase C1183.02
ModBaseO74830Database of comparative protein structure models
Pfam Protein DomainsO74830Pfam Domain Arrangement
RefSeq PeptideNP_587885glutathione S-transferase (predicted)
RefSeq mRNANM_001022877972h- glutathione S-transferase (predicted) (SPCC1183.02), mRNA
European Nucleotide ArchiveCAA21082ENA Protein Mapping
SPD / RIKEN13/13C03Orfeome Localization Data

Literature for SPCC1183.02
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Search: UK PMC or PubMed

Release Version: PomBase:18.34 - 04 Apr 2013