rpl101 (SPCC1183.08c)


Gene Standard Namerpl101 Characterisation Statuspublished
Systematic IDSPCC1183.08c Feature Typeprotein coding
Synonymsrpl1-1, rpl10a-1 Name Description
Product60S ribosomal protein L10a Product Size216aa, 23.92 kDa
Genomic Location Chromosome III, 612630-611797 (834nt); CDS:612550-611900 (651nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0003735structural constituent of ribosomeISOSGD:S000003103GO_REF:0000024255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0002181cytoplasmic translationNASGO_REF:0000051445
GO:0006412translationISOSGD:S000003103GO_REF:0000024597
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005829cytosolIDAPMID:168233722317
GO:0022625cytosolic large ribosomal subunitISOSGD:S000003103GO_REF:000002482
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002061inviable vegetative cell populationMicroscopyrpl101ΔNullPMID:204732891309
Microscopyrpl101ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0000311inviable after spore germination with normal, unseptated germ tube morphologyMicroscopyrpl101ΔNullPECO:0000005, PECO:0000137PMID:23697806237
FYPO:0002151inviable sporeMicroscopyrpl101ΔNullPECO:0000005, PECO:0000137PMID:23697806447
penetrance FYPO_EXT:0000001
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1612630611797

UTRs

Region Start End Reference
five_prime_UTR612630612551PMID:21511999
three_prime_UTR611899611797PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00687 Pfam IPR028364 Ribosomal protein L1 17 211 5
PS01199 Prosite Patterns IPR023673 Ribosomal protein L1 116 135 2
PTHR23105 HMMPANTHER 1 216 9
PTHR23105:SF4 HMMPANTHER 1 216 2
G3DSA:3.40.50.790 Gene3D IPR016095 62 151 4
G3DSA:3.30.190.20 Gene3D IPR016094 152 216 4
G3DSA:3.30.190.20 Gene3D IPR016094 8 60 4
SSF56808 SuperFamily IPR023674 3 216 5
Low complexity (SEG) seg 89 105
PIRSF002155 PIRSF IPR002143 Ribosomal protein L1 1 216 3

View domain organization at Pfam

Protein Properties

Ave. residue weight 110.73 Da
Charge 18.50
Isoelectric point 10.52
Molecular weight 23.92 kDa
Number of residues 216
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
200647.84during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
10938.71during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)DuringConditionScaleEvidenceReference
7.1during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
90during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4564
conserved in eukaryotes4482
conserved in bacteria1001
conserved in metazoa3419
conserved in vertebrates3394
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
bdf2BET family double bromodomain protein Bdf2 Affinity Capture-MSPMID:24013502
sog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
epe1Jmjc domain chromatin associated protein Epe1 Affinity Capture-MSPMID:24013502
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
External References
Database Identifier Description
NBRP SPCC1183.08c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC1183.08c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPCC1183.08c BioGRID Interaction Datasets
Expression Viewer SPCC1183.08c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPCC1183.08c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPCC1183.08c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPCC1183.08c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPCC1183.08c Polyadenylation Viewer (Gullerova lab)
pombeTV SPCC1183.08c Transcriptome Viewer (Bähler Lab)
Cyclebase SPCC1183.08c Cell Cycle Data
GEO SPCC1183.08c GEO profiles
PInt SPCC1183.08c Protein-Protein Interaction Predictor (Bähler Lab)
EntrezGene253922260S ribosomal protein L10a
WikiGene253922260S ribosomal protein L10a
SPD / RIKEN42/42F10Orfeome Localization Data
UniProtKB/SwissProtO7483660S ribosomal protein L1-B
ModBaseO74836Database of comparative protein structure models
StringO74836Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_58789160S ribosomal protein L10a
RefSeq mRNANM_001022883972h- 60S ribosomal protein L10a (rpl101), mRNA
European Nucleotide ArchiveCAA21088ENA Protein Mapping
UniParcUPI0000132EB8UniProt Archive

Literature for rpl101

Search: Europe PMC or PubMed

Release Version: PomBase:21_41 - 24 Feb 2014