rpl101 (SPCC1183.08c)

Gene Standard Namerpl101 Characterisation Statuspublished
Systematic IDSPCC1183.08c Feature Typeprotein coding
Synonymsrpl1-1, rpl10a-1 Name Description
Product60S ribosomal protein L10a Product Size216aa, 23.92 kDa
Genomic Location Chromosome III, 612630-611797 (834nt); CDS:612550-611900 (651nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
structural constituent of ribosome255
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
Term NameCount
cytoplasmic translation473
Annotation ExtensionEvidenceWith/FromReference
GO Cellular Component
Term NameCount
Annotation ExtensionEvidenceWith/FromReference
cytosolic large ribosomal subunit83
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Inviable

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002061inviable vegetative cell populationMicroscopyrpl101ΔNullPECO:0000005, PECO:0000137PMID:236978061338

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0000311inviable after spore germination with normal, unseptated germ tube morphologyMicroscopyrpl101ΔNullPECO:0000005, PECO:0000137PMID:23697806237
FYPO:0002151inviable spore465
penetrance FYPO_EXT:0000001Microscopyrpl101ΔNullPECO:0000005, PECO:0000137PMID:23697806
Ensembl transcript structure with UTRs, exons and introns


Exon Start End


Region Coordinates Reference
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00687 Pfam IPR028364 Ribosomal protein L1/ribosomal biogenesis protein 17 211 5
PS01199 Prosite Patterns IPR023673 Ribosomal protein L1, conserved site 116 135 2
PTHR23105 HMMPANTHER 1 216 9
PTHR23105:SF4 HMMPANTHER 1 216 2 Gene3D IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich 62 151 4 Gene3D IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich 8 60 5 Gene3D IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich 152 216 5
SSF56808 SuperFamily IPR023674 Ribosomal protein L1-like 3 216 5
PIRSF002155 PIRSF IPR002143 Ribosomal protein L1 1 216 3

View domain organization at Pfam

Protein Properties

Ave. residue weight 110.73 Da
Charge 18.50
Isoelectric point 10.52
Molecular weight 23.92 kDa
Number of residues 216

Protein Modifications

Term IDTerm NameEvidenceResidueReferenceCount
MOD:00046O-phospho-L-serineexperimental evidenceS11PMID:217125471670
present during mitotic M phase
experimental evidenceS8PMID:24763107
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
128923during GO:0000080PECO:0000126,
single_cellmass spectrometry evidencePMID:24763107
120195during GO:0000084PECO:0000126,
single_cellmass spectrometry evidencePMID:24763107
127354during GO:0000085PECO:0000126,
single_cellmass spectrometry evidencePMID:24763107
141473during GO:0000087PECO:0000126,
single_cellmass spectrometry evidencePMID:24763107
200647.84during GO:0072690PECO:0000005,
population_wideexperimental evidencePMID:23101633
127341during GO:0072690PECO:0000126,
single_cellmass spectrometry evidencePMID:24763107
10938.71during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
90during GO:0072690PECO:0000005,
population_wideexperimental evidencePMID:23101633
7.1during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
population_wideexperimental evidencePMID:23101633
Species Distribution
conserved in fungi4600
conserved in eukaryotes4514
conserved in bacteria1000
conserved in metazoa3425
conserved in vertebrates3400

Manually curated orthologous groups


Orthologs in Compara

Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
cid14poly(A) polymerase Cid14 Affinity Capture-MSPMID:20403971
sog2leucine-rich repeat protein Lrp1 Affinity Capture-MSPMID:23462181
nak1PAK-related kinase Nak1 Affinity Capture-MSPMID:23462181
hhp1serine/threonine protein kinase Hhp1 Affinity Capture-MSPMID:24055157
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
hhp2serine/threonine protein kinase Hhp2 Affinity Capture-MSPMID:24055157
External References
Database Identifier Description
NBRP SPCC1183.08c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC1183.08c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPCC1183.08c BioGRID Interaction Datasets
Expression Viewer SPCC1183.08c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPCC1183.08c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPCC1183.08c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPCC1183.08c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPCC1183.08c Polyadenylation Viewer (Gullerova lab)
pombeTV SPCC1183.08c Transcriptome Viewer (Bähler Lab)
Cyclebase SPCC1183.08c Cell Cycle Data
GEO SPCC1183.08c GEO profiles
PInt SPCC1183.08c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPCC1183.08c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPCC1183.08c Fission yeast phenotypic data & analysis
SPD / RIKEN42/42F10Orfeome Localization Data
UniProtKB/SwissProtO7483660S ribosomal protein L1-B
ModBaseO74836Database of comparative protein structure models
STRINGO74836Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_58789160S ribosomal protein L1
RefSeq mRNANM_001022883972h- 60S ribosomal protein L1 (rpl101), mRNA
European Nucleotide ArchiveCAA21088.1ENA Protein Mapping
UniParcUPI0000132EB8UniProt Archive

Literature for rpl101

Search: Europe PMC or PubMed

Release Version: PomBase:23_47 - 27 Oct 2014