spo13 (SPCC1183.12)

Gene Standard Namespo13 ChromosomeIII
Systematic IDSPCC1183.12 Gene Start604961
SynonymsSPNCRNA.546, SPNGAF60 Gene End604366
Productsporulation specific guanyl-nucleotide exchange factor Spo13 Gene Length596
Feature Typeprotein coding CDS Start604872
Name Description CDS End604405
Characterisation Statuspublished CDS Length468

Ensembl Gene Location
  1. fxn1
  2. pet127
  3. lig4
  4. ung1
  5. spo13
  6. SPCC1183.07
  7. rpl101
Fission Yeast Phenotype Ontology

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0000121abnormal sporulationno_name (unrecorded)unrecordedPMID:18367542
FYPO:0000478normal meiosisMicroscopyspo13-B82 (unknown)unknownNot specifiedPMID:3442824
FYPO:0000583abolished sporulationMicroscopyspo13-B82 (unknown)unknownNot specifiedPMID:3442824
FYPO:0001491viable vegetative cellno_name (unrecorded)unrecordedPMID:18367542
GO Molecular Function

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0005085guanyl-nucleotide exchange factor activity
heterologous_systemIGISGD:S000005216PMID:20130084
GO:0005515protein bindingIPIspo2PMID:18367542
GO Biological Process

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0030437ascospore formationIMPPMID:18367542
IMPPMID:3442824
GO:0031322ascospore-type prospore-specific spindle pole body remodelingIMPPMID:18367542
GO:0032120ascospore-type prospore membrane assemblyIMPPMID:20130084
GO Cellular Component

Ontology Graph

Contact Curators
Term IDTerm NameEvidenceWith/FromReference
GO:0005816spindle pole body
exists_during meiotic cell cycleIDAPMID:18367542
GO:0005824outer plaque of spindle pole bodyIDAPMID:18367542
Transcript
Contact Curators
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1604961604857
2604805604366

References

Region Start End Reference
three_prime_UTR604404604366PMID:21511999
Protein Features
Contact Curators

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF06428 IPR009449 Pfam GDPGTP exchange factor Sec2p 47 119 2
SSF144284 SuperFamily 38 120 2
Coil ncoils Rabaptin coiled-coil domain 41 76 974
Coil ncoils Rabaptin coiled-coil domain 84 105 974

View domain organization at Pfam

Protein Properties

Ave. residue weight 114.94 Da
Charge 2.00
Isoelectric point 8.91
Molecular weight 15.86 kDa
Number of residues 138
Sequence
Contact Curators
Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
expressed during meiosis, specifically PMID:1836754
protein levelexperimental evidencevegetative growth of a single-celled organismPECO:0000005,
PECO:0000014		population_widePMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127		population_widePMID:23101633
RNA levelexperimental evidencevegetative growth of a single-celled organismPECO:0000014,
PECO:0000005		population_wide0.15PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide0.31PMID:23101633
Warning
DescriptionQualifierReference
previously annotated as ncRNA
Species Distribution
DescriptionQualifierReference
orthologs cannot be distinguished
Manually curated orthologous groups
SpeciesGeneDescription

Contact Curators
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
SPBC902.03Nem1-Spo7 complex regulatory subunit Spo7 (predicted) Two-hybridPMID:21775631
cam1calmodulin Cam1 Co-localizationPMID:20833892
spo7sporulation protein Spo7 Two-hybridPMID:21775631
Contact Curators
External References
Database Identifier Description
NBRP SPCC1183.12 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC1183.12 Retrieval of eukaryotic orthologs
BioGrid SPCC1183.12 BioGRID Interaction Datasets
Bähler Lab SPCC1183.12 Cell Cycle Expression Profile
Bähler Lab SPCC1183.12 Meiosis/Sporulation Expression Profies
Bähler Lab SPCC1183.12 Pheromone response/mating expression profiles
Bähler Lab SPCC1183.12 Environmental stress expression profiles
Bähler Lab SPCC1183.12 Bähler Lab Transcriptome Viewer
Cyclebase SPCC1183.12 Cell Cycle Data
PInt SPCC1183.12 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPCC1183.12 Entrez Gene
WikiGene9407039sporulation specific protein Spo13
Uniprot_genenameSPO13
EntrezGene9407039sporulation specific protein Spo13
UniProtKB/SwissProtC6Y4C9Sporulation-specific protein 13
ModBaseC6Y4C9Database of comparative protein structure models
Pfam Protein DomainsC6Y4C9Pfam Domain Arrangement
RefSeq_mRNA_predictedXM_002788902972h- sporulation specific protein Spo13 (spo13), mRNA
RefSeq_peptide_predictedXP_002788948sporulation specific protein Spo13
European Nucleotide ArchiveCBA11516ENA Protein Mapping

Literature for spo13
Contact Curators

Search: UK PMC or PubMed

Release Version: PomBase:18.34 - 04 Apr 2013