SPCC11E10.01

Gene Standard NameUnassigned ChromosomeIII
Systematic IDSPCC11E10.01 Gene Start1451701
SynonymsSPCC61.06 Gene End1454632
Productcystathionine beta-lyase (predicted) Gene Length2932
Feature Typeprotein coding CDS Start1453242
Name Description CDS End1454414
Characterisation Statusbiological_role_inferred CDS Length1173

Ensembl Gene Location
  1. SPCC61.03
  2. SPCC61.04c
  3. SPCC61.05
  4. SPNCRNA.1197
  5. SPCC11E10.01
  6. gpi8
  7. SPNCRNA.1198
  8. mug1
  9. ppr6
  10. ynd1
Fission Yeast Phenotype Ontology

Ontology Graph

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Term IDTerm NameEvidenceAlleleAllele TypeExpressionConditionReference
FYPO:0002060viable vegetative cell populationMicroscopySPCC11E10.01delta (deletion)deletionPMID:20473289
GO Molecular Function

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Term IDTerm NameEvidenceWith/FromReference
GO:0004121cystathionine beta-lyase activityISSUniProtKB:Q96VU8GO_REF:0000001
GO:0030170pyridoxal phosphate bindingIEAIPR000277, IPR015422, IPR015421GO_REF:0000002
GO Biological Process

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Term IDTerm NameEvidenceWith/FromReference
GO:0019279L-methionine biosynthetic process from L-homoserine via cystathionineICGO:0004121GO_REF:0000001
GO Cellular Component

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Term IDTerm NameEvidenceWith/FromReference
GO:0005634nucleusIEASL-0191GO_REF:0000039
GO:0005777peroxisomeISSUniProtKB:P53101GO_REF:0000001
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
114517011454632

References

Region Start End Reference
five_prime_UTR14517011453241PMID:21511999
three_prime_UTR14544151454632PMID:21511999
three_prime_UTR14544151454632PMID:21511999
Protein Features
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Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID InterPro Database Description Start End All Genes
PF01053 IPR000277 Pfam Cys/Met metabolism, pyridoxal phosphate-dependent enzyme 10 382 4
PS00868 IPR000277 Prosite Patterns Cys/Met metabolism, pyridoxal phosphate-dependent enzyme 194 208 4
G3DSA:3.90.1150.10 IPR015422 Gene3D 252 384 23
G3DSA:3.40.640.10 IPR015421 Gene3D 9 251 31
SSF53383 IPR015424 SuperFamily 13 383 31
PIRSF001434 IPR000277 PIRSF Cys/Met metabolism, pyridoxal phosphate-dependent enzyme 10 386 3
PTHR11808:SF18 IPR006238 hmmpanther 6 388 1
PTHR11808 IPR000277 hmmpanther Cys/Met metabolism, pyridoxal phosphate-dependent enzyme 6 388 4
Coil ncoils Rabaptin coiled-coil domain 368 389 974
TIGR01329 IPR006238 tigrfam Cystathionine beta-lyase, eukaryotic 9 386 1

View domain organization at Pfam

Protein Properties

Ave. residue weight 109.68 Da
Charge 3.00
Isoelectric point 7.03
Molecular weight 42.77 kDa
Number of residues 390
Sequence
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Gene Expression
DescriptionEvidenceDuringConditionRangeAverage per CellReference
protein levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide15767.23PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide28747.7PMID:23101633
RNA levelexperimental evidencesingle-celled organism vegetative growth phasePECO:0000014,
PECO:0000005		population_wide5.5PMID:23101633
experimental evidencecell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005		population_wide7.3PMID:23101633
Species Distribution
DescriptionQualifierReference
predominantly single copy (one to one)
conserved in fungi
conserved in eukaryotes
conserved in bacteria
conserved in metazoa
conserved in vertebrates
Manually curated orthologous groups
SpeciesGeneDescription

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External References
Database Identifier Description
NBRP SPCC11E10.01 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC11E10.01 Retrieval of eukaryotic orthologs
BioGrid SPCC11E10.01 BioGRID Interaction Datasets
Bähler Lab SPCC11E10.01 Cell Cycle Expression Profile
Bähler Lab SPCC11E10.01 Meiosis/Sporulation Expression Profies
Bähler Lab SPCC11E10.01 Pheromone response/mating expression profiles
Bähler Lab SPCC11E10.01 Environmental stress expression profiles
Bähler Lab SPCC11E10.01 Bähler Lab Transcriptome Viewer
Cyclebase SPCC11E10.01 Cell Cycle Data
PInt SPCC11E10.01 Bähler Lab Protein-Protein Interaction Predictor
Entrez Gene SPCC11E10.01 Entrez Gene
IntEnz4.4.1.8
KEGGMAP00272
KEGGMAP00271
KEGGMAP00920
WikiGene2539019cystathionine beta-lyase (predicted)
Uniprot_genenameSTR3
EntrezGene2539019cystathionine beta-lyase (predicted)
SPD / RIKEN40/40D04Orfeome Localization Data
UniProtKB/SwissProtO94350Cystathionine beta-lyase
ModBaseO94350Database of comparative protein structure models
Pfam Protein DomainsO94350Pfam Domain Arrangement
RefSeq PeptideNP_588197cystathionine beta-lyase (predicted)
RefSeq mRNANM_001023187972h- cystathionine beta-lyase (predicted) (SPCC11E10.01), mRNA
European Nucleotide ArchiveCAA22275ENA Protein Mapping
UniParcUPI000050C0A4UniProt Archive

Literature for SPCC11E10.01
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Search: UK PMC or PubMed

Release Version: PomBase:18_35 - 11 May 2013