pdh1 (SPCC1235.08c)

Synonyms ChromosomeIII
ProductDUF1751 family protein Gene Start194803
Feature Typeprotein coding Gene End191695
Name Description CDS Start193126
Characterisation Statusconserved_unknown CDS End192446

Ensembl Gene Location
fft2 SPNCRNA.1117 vma21 sif1 fta7 > pdh1 < hif2 sec6 SPCC1235.11
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1194803191695

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF08551 Pfam Protein of unknown function DUF1751, integral membrane, eukaryotic 51 149 93.1 1
144091 Superfamily 2 114 26.5 7
TMHMM tmhmm Double transmembrane domain 10 30 0.99403 1312
TMHMM tmhmm Double transmembrane domain 36 56 0.97852 1312
TMHMM tmhmm Double transmembrane domain 66 86 0.97279 1312
TMHMM tmhmm Double transmembrane domain 98 118 0.99325 1312
TMHMM tmhmm Double transmembrane domain 128 148 0.9603 1312
TMHMM tmhmm Double transmembrane domain 163 183 0.94886 1312
TMHMM tmhmm Double transmembrane domain 188 208 0.87793 1312
SIGNALP_EUK Signalp 1 28 0 456

Sequence Feature

Term IDDescriptionSourceAll Genes
SO:0000065protein N-terminal signal sequenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000065
SO:0000073protein transmembrane helicesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000073

Protein Properties

Ave. residue weight 115.14 Da
Charge 5.00
Isoelectric point 7.80
Molecular weight 26.02 kDa
Number of residues 226
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005783endoplasmic reticulumIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005783
GO:0005794Golgi apparatusISS SGD:S000005467GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005794
GO:0030137COPI-coated vesicleISS SGD:S000005467GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0030137

Species Distribution

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DescriptionSourceAll Genes
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096

Manually Curated Orthologs

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SpeciesGeneDescription


External References

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Database Identifier Description
NBRP SPCC1235.08c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC1235.08c Retrieval of eukaryotic orthologs
BioGrid SPCC1235.08c BioGRID Interaction Datasets
Bähler Lab SPCC1235.08c Cell Cycle Expression Profile
Bähler Lab SPCC1235.08c Meiosis/Sporulation Expression Profies
Bähler Lab SPCC1235.08c Pheromone response/mating expression profiles
Bähler Lab SPCC1235.08c Environmental stress expression profiles
Bähler Lab SPCC1235.08c Bähler Lab Transcriptome Viewer
Cyclebase SPCC1235.08c Cell Cycle Data
Entrez Gene SPCC1235.08c Link to Entrez Gene
SPD / RIKEN07/07H07Orfeome Localization Data
UniProtKB/SwissProtO42826Protein pdh1
ArrayExpressO42826Link to ArrayExpress
RefSeq PeptideNP_587734DUF1751 family protein
RefSeq mRNANM_001022729972h- DUF1751 family protein (pdh1), mRNA
European Nucleotide ArchiveCU329672ENA EMBL mapping
European Nucleotide ArchiveD88384ENA EMBL mapping
European Nucleotide ArchiveBAA24946ENA Protein Mapping
European Nucleotide ArchiveCAA21112ENA Protein Mapping
UniParcUPI00001314AAUniProt Archive

Literature for pdh1

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Search: UK PMC or PubMed