SPCC1235.11

Synonyms ChromosomeIII
Productmitochondrial protein, human BRP44L ortholog Gene Start200020
Feature Typeprotein coding Gene End201625
Name Description CDS Start200130
Characterisation Statusconserved_unknown CDS End200987

Ensembl Gene Location
pdh1 hif2 sec6 > SPCC1235.11 < mug146 SPNCRNA.1118 ght6 SPCC1235.17
Transcript
Contact Curators | Back to Top
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1200020200131
2200172200276
3200365200459
4200643200683
5200750200844
6200900201625

Protein Feature Information
Contact Curators | Back to Top

Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF03650 Pfam Uncharacterised protein family UPF0041 30 132 124.6 2
TMHMM tmhmm Double transmembrane domain 32 51 0.58799 1312
TMHMM tmhmm Double transmembrane domain 61 82 0.89145 1312

Protein Properties

Ave. residue weight 113.87 Da
Charge 13.50
Isoelectric point 10.76
Molecular weight 16.06 kDa
Number of residues 141
Sequence
Contact Curators | Back to Top

Fission Yeast Phenotype

 Contact Curators | Back to Top
Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

 Contact Curators | Back to Top
Cellular Component
Contact Curators | Back to Top
GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005739mitochondrionISS UniProtKB:P53157GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005739
IDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year reference

Species Distribution

 Contact Curators | Back to Top
DescriptionSourceAll Genes
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096

Manually Curated Orthologs

 Contact Curators | Back to Top
SpeciesGeneDescription

Interactions

Contact Curators | Back to Top

Genetic Interactions from BioGRID

Gene Feature Evidence Source
sre2membrane-tethered transcription factor (predicted) Negative Genetic
dsc4conserved fungal protein Negative Genetic
dsc2UBA domain protein Ucp14 Negative Genetic
dsc1ubiquitin-protein ligase E3 (predicted) Negative Genetic


External References

 Contact Curators | Back to Top
Database Identifier Description
NBRP SPCC1235.11 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC1235.11 Retrieval of eukaryotic orthologs
BioGrid SPCC1235.11 BioGRID Interaction Datasets
Bähler Lab SPCC1235.11 Cell Cycle Expression Profile
Bähler Lab SPCC1235.11 Meiosis/Sporulation Expression Profies
Bähler Lab SPCC1235.11 Pheromone response/mating expression profiles
Bähler Lab SPCC1235.11 Environmental stress expression profiles
Bähler Lab SPCC1235.11 Bähler Lab Transcriptome Viewer
Cyclebase SPCC1235.11 Cell Cycle Data
Entrez Gene SPCC1235.11 Link to Entrez Gene
SPD / RIKEN11/11D08Orfeome Localization Data
UniProtKB/SwissProtO74847UPF0041 protein C1235.11
ArrayExpressO74847Link to ArrayExpress
RefSeq PeptideNP_587737hypothetical protein SPCC1235.11
RefSeq mRNANM_001022732972h- hypothetical protein (SPCC1235.11), mRNA
European Nucleotide ArchiveCU329672ENA EMBL mapping
European Nucleotide ArchiveCAA21115ENA Protein Mapping
UniParcUPI0000069729UniProt Archive

Literature for SPCC1235.11

 Contact Curators | Back to Top
Search: UK PMC or PubMed