ght5 (SPCC1235.14)


Gene Standard Nameght5 Characterisation Statuspublished
Systematic IDSPCC1235.14 Feature Typeprotein coding
Synonyms Name Description
Producthexose transmembrane transporter Ght5 Product Size546aa, 60.32 kDa
Genomic Location Chromosome III, 212160-214376 (2217nt); CDS:212313-213953 (1641nt)

Ensembl Gene Location
GO Molecular Function
GO Biological Process
GO Cellular Component
Term NameCount
integral component of plasma membrane50
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Viable

Population Phenotype

Term NameAlleleExpressionCount
viable vegetative cell populationght5ΔNull3809

Cell Phenotype

Term NameAlleleExpressionCount
viable vegetative cell with normal cell morphologyght5ΔNull3094
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons212160..214376
mRNA212160..214376
5' UTR212160..212312AF017180
CDS212313..213953
3' UTR213954..214376SPD179
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF00083 Pfam IPR005828 General substrate transporter 11 467 15
TMhelix TMHMM 403 425 959
TMhelix TMHMM 89 111 959
TMhelix TMHMM 304 326 959
TMhelix TMHMM 118 135 959
TMhelix TMHMM 145 167 959
TMhelix TMHMM 368 390 959
TMhelix TMHMM 331 353 959
TMhelix TMHMM 7 29 959
TMhelix TMHMM 180 199 959
TMhelix TMHMM 429 451 959
PS50850 Prosite Profiles IPR020846 Major facilitator superfamily domain 9 456 55
PS00216 Prosite Patterns IPR005829 Sugar transporter, conserved site 318 335 15
PTHR24063 HMMPANTHER 7 494 11
PTHR24063:SF337 HMMPANTHER 7 494 8
1.20.1250.20 Gene3D 263 457 72
1.20.1250.20 Gene3D 50 204 72
SSF103473 SuperFamily IPR020846 Major facilitator superfamily domain 8 465 76
SignalP-noTM signalp 1 21 212
PR00171 PRINTS IPR003663 Sugar/inositol transporter 276 286 10
PR00171 PRINTS IPR003663 Sugar/inositol transporter 369 390 10
PR00171 PRINTS IPR003663 Sugar/inositol transporter 17 27 10
PR00171 PRINTS IPR003663 Sugar/inositol transporter 114 133 10
PR00171 PRINTS IPR003663 Sugar/inositol transporter 392 404 10
TIGR00879 tigrfam IPR003663 Sugar/inositol transporter 7 463 10

View domain organization at Pfam

Protein Properties

Ave. residue weight 110.48 Da
Charge -3.00
Isoelectric point 5.90
Molecular weight 60.32 kDa
Number of residues 546
Modifications

Protein Modifications

Term NameResidueCount
O-phospho-L-serine 1672
present during mitotic M phaseS536
present during mitotic M phaseS537
Annotation ExtensionEvidenceResidueReference
present during mitotic M phase experimental evidence S536 PMID:21712547
present during mitotic M phase experimental evidence S537 PMID:21712547
O-phospho-L-threonineT485 698
Annotation ExtensionEvidenceResidueReference
experimental evidence T485 PMID:24763107
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
96862during GO:0000080PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
104327during GO:0000084PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
95738during GO:0000085PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
102458during GO:0000087PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
59226.53during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
102412during GO:0072690PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
10138.36during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
28during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
8during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Genome Organisation
DescriptionQualifierReferenceCount
tandem duplication30
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4603
conserved in eukaryotes4514
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Physical Interactions

Source: BioGRID

View all interactions in esyN
View the HCPIN interactions in esyN

Gene Product Evidence Reference
affinity captured bypaa1protein phosphatase regulatory subunit Paa1 Affinity Capture-MSPMID:22119525
External References
Database Identifier Description
NBRP SPCC1235.14 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC1235.14 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPCC1235.14 BioGRID Interaction Datasets
Expression Viewer SPCC1235.14 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPCC1235.14 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPCC1235.14 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPCC1235.14 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPCC1235.14 Polyadenylation Viewer (Gullerova lab)
pombeTV SPCC1235.14 Transcriptome Viewer (Bähler Lab)
GEO SPCC1235.14 GEO profiles
PInt SPCC1235.14 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPCC1235.14 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPCC1235.14 Fission yeast phenotypic data & analysis
Cyclebase SPCC1235.14.1 Cell Cycle Data
SPD / RIKEN34/34E03Orfeome Localization Data
UniProtKB/SwissProtP78831High-affinity glucose transporter ght5
ModBaseP78831Database of comparative protein structure models
STRINGP78831Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_587740hexose transporter Ght5
RefSeq mRNANM_001022735972h- hexose transporter Ght5 (ght5), mRNA
European Nucleotide ArchiveAF051141ENA EMBL mapping
European Nucleotide ArchiveD89179ENA EMBL mapping
European Nucleotide ArchiveCAA21118.1ENA Protein Mapping
UniParcUPI000012B422UniProt Archive

Literature for ght5

Search: Europe PMC or PubMed

Release Version: PomBase:26_52 - 11 May 2015