vma21 (SPCC1235.16)

Synonyms ChromosomeIII
Productvacuolar H+-ATPase assembly protein Vma21 (predicted) Gene Start187330
Feature Typeprotein coding Gene End188988
Name Description CDS Start188100
Characterisation Statusbiological_role_inferred CDS End188592

Ensembl Gene Location
SPCC1235.03 SPCC1235.04c fft2 SPNCRNA.1117 > vma21 < sif1 fta7 pdh1 hif2
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1187330188149
2188323188414
3188468188988

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF09446 Pfam Vacuolar ATPase assembly integral membrane protein VMA21-like domain 17 74 48.5 1
TMHMM tmhmm Double transmembrane domain 20 41 0.98796 1312
TMHMM tmhmm Double transmembrane domain 52 73 0.9992 1312

Protein Properties

Ave. residue weight 112.43 Da
Charge 4.00
Isoelectric point 10.07
Molecular weight 9.89 kDa
Number of residues 88
Sequence
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Gene Ontology Annotations

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Biological Process
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0070070proton-transporting V-type ATPase complex assemblyISS SGD:S000003337GO_REF:0000024Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0070070

Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0030176integral to endoplasmic reticulum membraneISS SGD:S000003337GO_REF:0000024Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0030176
GO:0033116ER-Golgi intermediate compartment membraneIEAGO_REF:0000023Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0033116

Disease Association

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DescriptionSourceAll Genes
X-linked myopathy with excessive autophagyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0005040

Warning

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DescriptionSourceAll Genes
new geneTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000082

Species Distribution

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DescriptionSourceAll Genes
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096

Manually Curated Orthologs

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SpeciesGeneDescription


External References

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Database Identifier Description
NBRP SPCC1235.16 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC1235.16 Retrieval of eukaryotic orthologs
BioGrid SPCC1235.16 BioGRID Interaction Datasets
Bähler Lab SPCC1235.16 Cell Cycle Expression Profile
Bähler Lab SPCC1235.16 Meiosis/Sporulation Expression Profies
Bähler Lab SPCC1235.16 Pheromone response/mating expression profiles
Bähler Lab SPCC1235.16 Environmental stress expression profiles
Bähler Lab SPCC1235.16 Bähler Lab Transcriptome Viewer
Cyclebase SPCC1235.16 Cell Cycle Data
Entrez Gene SPCC1235.16 Link to Entrez Gene
UniProtKB/SwissProtC6Y4C8Vacuolar ATPase assembly integral membrane protein vma21
ArrayExpressC6Y4C8Link to ArrayExpress
RefSeq_mRNA_predictedXM_002788901972h- vacuolar H+-ATPase assembly protein Vma21 (predicted) (vma21), mRNA
RefSeq_peptide_predictedXP_002788947vacuolar H+-ATPase assembly protein Vma21 (predicted)
European Nucleotide ArchiveCU329672ENA EMBL mapping
European Nucleotide ArchiveCBA11515ENA Protein Mapping
UniParcUPI0001B062B1UniProt Archive

Literature for vma21

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Search: UK PMC or PubMed