SPCC126.12

Synonyms ChromosomeIII
ProductNGG1 interacting factor 3 family, implicated in trancription Gene Start2137595
Feature Typeprotein coding Gene End2139203
Name Description CDS Start2138121
Characterisation Statusconserved_unknown CDS End2139127

Ensembl Gene Location
SPCC126.08c SPCC126.09 iah1 SPCC126.11c > SPCC126.12 < SPCTRNAASP.08 SPCC126.13c prp18 sec65 lsm2 wtf23
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
121375952138334
221383882138702
321387552138925
421389912139203

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF01784 Pfam NGG1p interacting factor 3, NIF3 10 256 236.9 1
102705 Superfamily 4 278 250.7 1
TIGR00486 Tigrfam NGG1p interacting factor 3, NIF3 4 274 149.2 1

Protein Properties

Ave. residue weight 107.38 Da
Charge 0.00
Isoelectric point 6.51
Molecular weight 29.85 kDa
Number of residues 278
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Biological Process
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0006351transcription, DNA-dependentISS PFAM:PF01784GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0006351

Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
GO:0005737cytoplasmISS SGD:S000003189GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005737
GO:0005739mitochondrionISS SGD:S000003189GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005739
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829

Species Distribution

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DescriptionSourceAll Genes
conserved in BacteriaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000086
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in ArchaeaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000130
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094

Manually Curated Orthologs

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SpeciesGeneDescription

Interactions

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Genetic Interactions from BioGRID

Gene Feature Evidence Source
dsc3conserved fungal protein Positive Genetic


External References

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Database Identifier Description
NBRP SPCC126.12 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC126.12 Retrieval of eukaryotic orthologs
BioGrid SPCC126.12 BioGRID Interaction Datasets
Bähler Lab SPCC126.12 Cell Cycle Expression Profile
Bähler Lab SPCC126.12 Meiosis/Sporulation Expression Profies
Bähler Lab SPCC126.12 Pheromone response/mating expression profiles
Bähler Lab SPCC126.12 Environmental stress expression profiles
Bähler Lab SPCC126.12 Bähler Lab Transcriptome Viewer
Cyclebase SPCC126.12 Cell Cycle Data
Entrez Gene SPCC126.12 Link to Entrez Gene
SPD / RIKEN14/14H02Orfeome Localization Data
UniProtKB/SwissProtO94404Protein NIF3 homolog
ArrayExpressO94404Link to ArrayExpress
RefSeq PeptideNP_588455NGG1p interacting factor 3 family
RefSeq mRNANM_001023446972h- NGG1p interacting factor 3 family (SPCC126.12), mRNA
European Nucleotide ArchiveCU329672ENA EMBL mapping
European Nucleotide ArchiveCAA22481ENA Protein Mapping
UniParcUPI000013B4B4UniProt Archive

Literature for SPCC126.12

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Search: UK PMC or PubMed