SPCC1393.06c

Synonyms ChromosomeIII
ProductrRNA processing protein Ipi1 (predicted) Gene Start806120
Feature Typeprotein coding Gene End804483
Name Description CDS Start806009
Characterisation Statusbiological_role_inferred CDS End804627

Ensembl Gene Location
spt2 rps1501 fta4 ers1 > SPCC1393.06c < mug4 SPCC1393.08
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1806120805965
2805921805849
3805800805678
4805627804483

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF12333 Pfam IPI1-like domain 136 234 97.3 1
48371 Superfamily 64 188 20.3 119
TMHMM tmhmm Double transmembrane domain 130 149 0.41154 1312

Protein Properties

Ave. residue weight 113.61 Da
Charge 24.50
Isoelectric point 9.99
Molecular weight 46.92 kDa
Number of residues 413
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000049inviableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000049

Gene Ontology Annotations

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Biological Process
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0006364rRNA processingISS SGD:S000001127GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0006364

Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusISS SGD:S000001127GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
IDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year reference
GO:0005816spindle pole bodyIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005816

Species Distribution

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DescriptionSourceAll Genes
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096

Manually Curated Orthologs

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SpeciesGeneDescription

Interactions

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Physical Interactions from BioGRID

Gene Feature Evidence Source
crb3WD repeat protein Crb3 Affinity Capture-MS

External References

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Database Identifier Description
NBRP SPCC1393.06c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC1393.06c Retrieval of eukaryotic orthologs
BioGrid SPCC1393.06c BioGRID Interaction Datasets
Bähler Lab SPCC1393.06c Cell Cycle Expression Profile
Bähler Lab SPCC1393.06c Meiosis/Sporulation Expression Profies
Bähler Lab SPCC1393.06c Pheromone response/mating expression profiles
Bähler Lab SPCC1393.06c Environmental stress expression profiles
Bähler Lab SPCC1393.06c Bähler Lab Transcriptome Viewer
Cyclebase SPCC1393.06c Cell Cycle Data
Entrez Gene SPCC1393.06c Link to Entrez Gene
SPD / RIKEN21/21D08Orfeome Localization Data
UniProtKB/SwissProtO94718Pre-rRNA-processing protein ipi1
ArrayExpressO94718Link to ArrayExpress
RefSeq PeptideNP_587964rRNA processing protein Ipi1
RefSeq mRNANM_001022955972h- rRNA processing protein Ipi1 (SPCC1393.06c), mRNA
European Nucleotide ArchiveCU329672ENA EMBL mapping
European Nucleotide ArchiveCAB38162ENA Protein Mapping
UniParcUPI0001B06275UniProt Archive

Literature for SPCC1393.06c

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Search: UK PMC or PubMed