SPCC1393.13

Synonyms ChromosomeIII
ProductDUF89 family protein Gene Start824949
Feature Typeprotein coding Gene End827652
Name Description CDS Start825105
Characterisation Statusconserved_unknown CDS End826540

Ensembl Gene Location
ctr4 ten1 SPCTRNAGLY.11 SPCC1393.11 SPCC1393.12 > SPCC1393.13 < prl64 SPCC2H8.02 SPCC2H8.04 SPCC2H8.05c aah3
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1824949825135
2825243827652

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF01937 Pfam Domain of unknown function DUF89 26 419 389.5 2
111321 Superfamily 70 420 181.5 2

Protein Properties

Ave. residue weight 113.39 Da
Charge -8.50
Isoelectric point 5.22
Molecular weight 50.12 kDa
Number of residues 442
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

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Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829

Species Distribution

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DescriptionSourceAll Genes
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096

Manually Curated Orthologs

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SpeciesGeneDescription

Interactions

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Genetic Interactions from BioGRID

Gene Feature Evidence Source
dsc1ubiquitin-protein ligase E3 (predicted) Negative Genetic
SPBC27B12.11ctranscription factor (predicted) Phenotypic Suppression
dsc3conserved fungal protein Negative Genetic
snf5SWI/SNF complex subunit Snf5 Phenotypic Suppression


External References

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Database Identifier Description
NBRP SPCC1393.13 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC1393.13 Retrieval of eukaryotic orthologs
BioGrid SPCC1393.13 BioGRID Interaction Datasets
Bähler Lab SPCC1393.13 Cell Cycle Expression Profile
Bähler Lab SPCC1393.13 Meiosis/Sporulation Expression Profies
Bähler Lab SPCC1393.13 Pheromone response/mating expression profiles
Bähler Lab SPCC1393.13 Environmental stress expression profiles
Bähler Lab SPCC1393.13 Bähler Lab Transcriptome Viewer
Cyclebase SPCC1393.13 Cell Cycle Data
Entrez Gene SPCC1393.13 Link to Entrez Gene
SPD / RIKEN23/23B08Orfeome Localization Data
UniProtKB/SwissProtO94725UPF0364 protein C1393.13
ArrayExpressO94725Link to ArrayExpress
RefSeq PeptideNP_587971DUF89 family protein
RefSeq mRNANM_001022962972h- DUF89 family protein (SPCC1393.13), mRNA
European Nucleotide ArchiveCU329672ENA EMBL mapping
European Nucleotide ArchiveCAB38168ENA Protein Mapping
UniParcUPI0000069916UniProt Archive

Literature for SPCC1393.13

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Search: UK PMC or PubMed