mug55 (SPCC1620.04c)


Gene Standard Namemug55 Characterisation Statusconserved unknown
Systematic IDSPCC1620.04c Feature Typeprotein coding
Synonyms Name DescriptionMeiotically Upregulated Gene
ProductCdc20/Fizzy subfamily WD repeat protein Product Size509aa, 58.41 kDa
Genomic Location Chromosome III, 2150908-2149317 (1592nt); CDS:2150908-2149379 (1530nt)

Ensembl Gene Location
GO Cellular Component
Term NameCount
nucleus2692
Annotation ExtensionEvidenceWith/FromReference
protein complex1349
Annotation ExtensionEvidenceWith/FromReference
FYPO Single-Allele Phenotypes
Gene Deletion Viability: Viable

Population Phenotype

Term NameGenotypesCount
viable vegetative cell populationmug55Δ3837

Cell Phenotype

Term NameGenotypesCount
viable vegetative cell with normal cell morphologymug55Δ3100
Transcript
Ensembl transcript structure with UTRs, exons and introns

Transcript Structure

Region Coordinates Reference
Exons2150908..2149317
3' UTR2149378..2149317PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
SM00320 SMART IPR001680 WD40 repeat 190 229 112
SM00320 SMART IPR001680 WD40 repeat 320 362 112
SM00320 SMART IPR001680 WD40 repeat 430 467 112
SM00320 SMART IPR001680 WD40 repeat 277 317 112
SM00320 SMART IPR001680 WD40 repeat 234 272 112
PS50294 Prosite Profiles IPR017986 WD40-repeat-containing domain 183 371 104
PS50082 Prosite Profiles IPR001680 WD40 repeat 285 326 100
PTHR19918 HMMPANTHER IPR033010 The WD repeat Cdc20/Fizzy family 50 503 5
PTHR19918:SF5 HMMPANTHER 50 503 2
2.130.10.10 Gene3D IPR015943 WD40/YVTN repeat-like-containing domain 444 472 145
2.130.10.10 Gene3D IPR015943 WD40/YVTN repeat-like-containing domain 165 386 145
SSF50978 SuperFamily IPR017986 WD40-repeat-containing domain 159 467 135

View domain organization at Pfam

Term IDTerm NameReferenceCount
PBO:0000189Cdc20/Fizzy subfamilyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000189
PBO:0000190WD repeat proteinTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000190

Protein Properties

Ave. residue weight 114.75 Da
Charge 13.00
Codon Adaptation Index 0.37
Isoelectric point 8.63
Molecular weight 58.41 kDa
Number of residues 509
Sequence
Gene Expression

Qualitative Gene Expression

DescriptionLevelEvidenceReference
RNA levelincreased during GO:0051321experimental evidencePMID:16303567

Quantitative Gene Expression

View graphical display of gene expression data for mug55 (SPCC1620.04c)

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
0during GO:0072690PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
0.005during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000127,
PECO:0000014,
PECO:0000005
population wideexperimental evidencePMID:23101633
Taxonomic Conservation
DescriptionQualifierReferenceCount
no apparent S. cerevisiae ortholog601
conserved in fungi4605
conserved in eukaryotes4515
conserved in eukaryotes only2505
Orthologs

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Load genes that interact genetically with SPCC1620.04c into the Query Builder
View these interactions in esyN

Gene Product Evidence Reference
negative genetic interaction withmca1transcription factor, zf-fungal binuclear cluster type Mca1 (predicted) Negative GeneticPMID:22681890
negative genetic interaction withctp1CtIP-related endonuclease Negative GeneticPMID:22681890
negative genetic interaction withspo20sec14 cytosolic factor family, glycerophospholipid-transfer protein Spo20/Sec14 Negative GeneticPMID:22681890
negative genetic interaction withomh6alpha-1,2-mannosyltransferase Omh6 (predicted) Negative GeneticPMID:22681890
External References
Database Identifier Description
NBRP SPCC1620.04c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC1620.04c Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPCC1620.04c BioGRID Interaction Datasets
Expression Viewer SPCC1620.04c Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPCC1620.04c Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPCC1620.04c Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPCC1620.04c Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPCC1620.04c Polyadenylation Viewer (Gullerova lab)
pombeTV SPCC1620.04c Transcriptome Viewer (Bähler Lab)
GEO SPCC1620.04c GEO profiles
PInt SPCC1620.04c Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPCC1620.04c Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPCC1620.04c Fission yeast phenotypic data & analysis
Cyclebase SPCC1620.04c.1 Cell Cycle Data
SPD / RIKEN44/44H04Orfeome Localization Data
UniProtKB/SwissProtO94411Meiotic fizzy-related protein 2
ModBaseO94411Database of comparative protein structure models
STRINGO94411Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_588462Cdc20/Fizzy subfamily WD repeat protein
RefSeq mRNANM_001023453972h- Cdc20/Fizzy subfamily WD repeat protein (mug55), mRNA

Literature for mug55

Search: Europe PMC or PubMed

Release Version: PomBase:30_58 - 11 Mar 2016