SPCC1620.05


Gene Standard NameUnassigned Characterisation Statusbiological_role_inferred
Systematic IDSPCC1620.05 Feature Typeprotein coding
Synonyms Name Description
ProductRab geranylgeranyltransferase alpha subunit (predicted) Product Size344aa, 41.19 kDa
Genomic Location Chromosome III, 2152135-2157975 (5841nt); CDS:2152189-2153637 (1449nt)

Ensembl Gene Location
GO Molecular Function
Term NameCount
Rab geranylgeranyltransferase activity4
Annotation ExtensionEvidenceWith/FromReference
Rab GTPase binding8
Annotation ExtensionEvidenceWith/FromReference
GO Biological Process
GO Cellular Component
Term NameCount
cell division site299
Annotation ExtensionEvidenceWith/FromReference
cytosol2316
Annotation ExtensionEvidenceWith/FromReference
mitotic spindle pole body216
Annotation ExtensionEvidenceWith/FromReference
nucleus2690
Annotation ExtensionEvidenceWith/FromReference
Rab-protein geranylgeranyltransferase complex2
Annotation ExtensionEvidenceWith/FromReference
Fission Yeast Phenotype Ontology
Gene Deletion Viability: Inviable

Population Phenotype

Term NameAlleleExpressionCount
inviable vegetative cell populationSPCC1620.05ΔNull1427

Cell Phenotype

Term NameAlleleExpressionCount
inviable vegetative cell, abnormal cell shape, normal cell size199
penetrance FYPO_EXT:0000001, expressivity FYPO_EXT:0000003SPCC1620.05ΔNull
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
121521352152191
221522342152344
321523912152518
421525612152748
521528692153090
621531642153367
721534592157975

UTRs

Region Coordinates Reference
five_prime_UTR2152135..2152188PMID:21511999
three_prime_UTR2153638..2157975PMID:21511999
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01239 Pfam IPR002088 Protein prenyltransferase, alpha subunit 49 73 2
PF01239 Pfam IPR002088 Protein prenyltransferase, alpha subunit 217 245 2
PF01239 Pfam IPR002088 Protein prenyltransferase, alpha subunit 92 121 2
PF01239 Pfam IPR002088 Protein prenyltransferase, alpha subunit 129 157 2
PF01239 Pfam IPR002088 Protein prenyltransferase, alpha subunit 168 196 2
PS51147 Prosite Profiles IPR002088 Protein prenyltransferase, alpha subunit 214 248 2
PS51147 Prosite Profiles IPR002088 Protein prenyltransferase, alpha subunit 165 199 2
PS51147 Prosite Profiles IPR002088 Protein prenyltransferase, alpha subunit 89 123 2
PS51147 Prosite Profiles IPR002088 Protein prenyltransferase, alpha subunit 125 159 2
PS51147 Prosite Profiles IPR002088 Protein prenyltransferase, alpha subunit 266 293 2
PS51147 Prosite Profiles IPR002088 Protein prenyltransferase, alpha subunit 44 78 2
PTHR11129:SF2 HMMPANTHER 1 339 1
PTHR11129 HMMPANTHER 1 339 2
1.25.40.120 Gene3D 1 338 3
SSF48439 SuperFamily 1 338 2
Coil ncoils Rabaptin coiled-coil domain 6 39 971

View domain organization at Pfam

Protein Properties

Ave. residue weight 119.75 Da
Charge 7.50
Isoelectric point 8.33
Molecular weight 41.19 kDa
Number of residues 344
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
9008during GO:0000080PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
8572during GO:0000084PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
8368during GO:0000085PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
9956during GO:0000087PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
8131during GO:0072690PECO:0000126,
PECO:0000005
single cellmass spectrometry evidencePMID:24763107
389.16during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
1219.98during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
1.7during GO:0072690PECO:0000005,
PECO:0000014
population wideexperimental evidencePMID:23101633
0.61during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population wideexperimental evidencePMID:23101633
Disease Association
DescriptionQualifierReferenceCount
cancer142
Species Distribution
DescriptionQualifierReferenceCount
predominantly single copy (one to one)3092
conserved in fungi4604
conserved in eukaryotes4516
conserved in metazoa3432
conserved in vertebrates3407
conserved in eukaryotes only2503
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


External References
Database Identifier Description
NBRP SPCC1620.05 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC1620.05 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPCC1620.05 BioGRID Interaction Datasets
Expression Viewer SPCC1620.05 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPCC1620.05 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPCC1620.05 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPCC1620.05 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPCC1620.05 Polyadenylation Viewer (Gullerova lab)
pombeTV SPCC1620.05 Transcriptome Viewer (Bähler Lab)
Cyclebase SPCC1620.05 Cell Cycle Data
GEO SPCC1620.05 GEO profiles
PInt SPCC1620.05 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPCC1620.05 Peptides identified in tandem mass spectrometry proteomics experiments
SYSGRO SPCC1620.05 Fission yeast phenotypic data & analysis
SPD / RIKEN44/44F11Orfeome Localization Data
UniProtKB/SwissProtO94412Geranylgeranyl transferase type-2 subunit alpha
ModBaseO94412Database of comparative protein structure models
STRINGO94412Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_588463Rab geranylgeranyltransferase alpha subunit (predicted)
RefSeq mRNANM_001023454972h- Rab geranylgeranyltransferase alpha subunit (predicted) (SPCC1620.05), mRNA
European Nucleotide ArchiveCAA22489.1ENA Protein Mapping
UniParcUPI000006981CUniProt Archive

Literature for SPCC1620.05

Search: Europe PMC or PubMed

Release Version: PomBase:25_48 - 10 Jan 2015