SPCC1620.07c

Synonyms ChromosomeIII
Productlunapark homolog Gene Start2157552
Feature Typeprotein coding Gene End2155261
Name Description CDS Start2157450
Characterisation Statusconserved_unknown CDS End2156304

Ensembl Gene Location
mug163 mug55 SPNCRNA.1266 SPCC1620.05 SPCC1620.06c > SPCC1620.07c < SPCC1620.08 tfg1 cwf26
Transcript
Contact Curators | Back to Top
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
121575522157430
221573712157130
321570452155261

Protein Feature Information
Contact Curators | Back to Top

Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF10058 Pfam Domain of unknown function DUF2296 177 231 77.4 1
TMHMM tmhmm Double transmembrane domain 41 61 0.99538 1312
TMHMM tmhmm Double transmembrane domain 80 100 0.99787 1312

Sequence Feature

Term IDDescriptionSourceAll Genes
SO:0000065protein N-terminal signal sequenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000065
SO:0000073protein transmembrane helicesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000073

Protein Properties

Ave. residue weight 112.09 Da
Charge 21.00
Isoelectric point 10.06
Molecular weight 37.44 kDa
Number of residues 334
Sequence
Contact Curators | Back to Top

Fission Yeast Phenotype

 Contact Curators | Back to Top
Term IDDescriptionSourceAll Genes
FYPO:0000124viableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000124

Gene Ontology Annotations

 Contact Curators | Back to Top
Cellular Component
Contact Curators | Back to Top
GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005783endoplasmic reticulumIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005783
GO:0005794Golgi apparatusIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005794

Species Distribution

 Contact Curators | Back to Top
DescriptionSourceAll Genes
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096

Manually Curated Orthologs

 Contact Curators | Back to Top
SpeciesGeneDescription

Interactions

Contact Curators | Back to Top

Physical Interactions from BioGRID

Gene Feature Evidence Source
stc1LIM-like protein linking chromatin modification to RNAi, Stc1 Affinity Capture-MS

External References

 Contact Curators | Back to Top
Database Identifier Description
NBRP SPCC1620.07c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC1620.07c Retrieval of eukaryotic orthologs
BioGrid SPCC1620.07c BioGRID Interaction Datasets
Bähler Lab SPCC1620.07c Cell Cycle Expression Profile
Bähler Lab SPCC1620.07c Meiosis/Sporulation Expression Profies
Bähler Lab SPCC1620.07c Pheromone response/mating expression profiles
Bähler Lab SPCC1620.07c Environmental stress expression profiles
Bähler Lab SPCC1620.07c Bähler Lab Transcriptome Viewer
Cyclebase SPCC1620.07c Cell Cycle Data
Entrez Gene SPCC1620.07c Link to Entrez Gene
SPD / RIKEN18/18B04Orfeome Localization Data
UniProtKB/SwissProtO94414Protein lunapark homolog
ArrayExpressO94414Link to ArrayExpress
RefSeq PeptideNP_588465protein lunapark
RefSeq mRNANM_001023456972h- protein lunapark (SPCC1620.07c), mRNA
European Nucleotide ArchiveCU329672ENA EMBL mapping
European Nucleotide ArchiveCAA22491ENA Protein Mapping
UniParcUPI000006C0B2UniProt Archive

Literature for SPCC1620.07c

 Contact Curators | Back to Top
Search: UK PMC or PubMed