tfg1 (SPCC1620.09c)

Synonyms ChromosomeIII
Producttranscription factor TFIIF complex alpha subunit Tfg1 (predicted) Gene Start2163190
Feature Typeprotein coding Gene End2161195
Name Description CDS Start2163123
Characterisation Statusbiological_role_inferred CDS End2161331

Ensembl Gene Location
SPCC1620.05 SPCC1620.06c SPCC1620.07c SPCC1620.08 > tfg1 < cwf26 SPCC1620.12c nup97
Transcript
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Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
121631902162584
221625002162405
321623632161565
421615152161195

Protein Feature Information
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Protein Features

Ensembl protein image with mapped locations of structural domains
Feature ID Database Description Start End Score All Genes
PF05793 Pfam Transcription initiation factor IIF, alpha subunit 138 225 38.3 1
PF05793 Pfam Transcription initiation factor IIF, alpha subunit 263 510 23.2 1
50916 Superfamily 37 217 165.9 2


Protein Modifications

Term IDDescriptionSourceAll Genes
MOD:00696phosphorylated residue
Temporary processing gif - replaced by AJAX with count of genes annotated with the term MOD:00696

Protein Properties

Ave. residue weight 114.01 Da
Charge -10.00
Isoelectric point 5.05
Molecular weight 61.45 kDa
Number of residues 539
Sequence
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Fission Yeast Phenotype

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Term IDDescriptionSourceAll Genes
FYPO:0000049inviableTemporary processing gif - replaced by AJAX with count of genes annotated with the term FYPO:0000049

Gene Ontology Annotations

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Biological Process
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0006367transcription initiation from RNA polymerase II promoterISS UniProtKB:P41895GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0006367

Cellular Component
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0005634nucleusIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005634
GO:0005674transcription factor TFIIF complexISS UniProtKB:P41895GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005674
GO:0005829cytosolIDATemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - PubMed ID replaced by AJAX with the autor year referenceTemporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0005829

Molecular Function
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GO IDTermEvidenceWith/FromSourceAll Genes
GO:0000991core RNA polymerase II binding transcription factor activityISS UniProtKB:P41895GO_REF:0000001Temporary processing gif - replaced by AJAX with count of genes annotated with the term GO:0000991

Species Distribution

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DescriptionSourceAll Genes
predominantly uniformly single copy (one to one)Temporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000104
conserved in MetazoaTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000094
conserved in FungiTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000057
conserved in EukaryotesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000058
conserved in VertebratesTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000095
conserved in Eukaryotes onlyTemporary processing gif - replaced by AJAX with count of genes annotated with the term PBO:0000096

Manually Curated Orthologs

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SpeciesGeneDescription

Interactions

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Physical Interactions from BioGRID

Gene Feature Evidence Source
rpb3RNA polymerase II subunit 3 Affinity Capture-MS
Co-purification
tfg3transcription factor TFIIF complex subunit Tfg3 Affinity Capture-Western
fcp1CTD phosphatase Fcp1 Affinity Capture-MS
Affinity Capture-Western

External References

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Database Identifier Description
NBRP SPCC1620.09c Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC1620.09c Retrieval of eukaryotic orthologs
BioGrid SPCC1620.09c BioGRID Interaction Datasets
Bähler Lab SPCC1620.09c Cell Cycle Expression Profile
Bähler Lab SPCC1620.09c Meiosis/Sporulation Expression Profies
Bähler Lab SPCC1620.09c Pheromone response/mating expression profiles
Bähler Lab SPCC1620.09c Environmental stress expression profiles
Bähler Lab SPCC1620.09c Bähler Lab Transcriptome Viewer
Cyclebase SPCC1620.09c Cell Cycle Data
Entrez Gene SPCC1620.09c Link to Entrez Gene
SPD / RIKEN45/45C08Orfeome Localization Data
UniProtKB/SwissProtO94416Transcription initiation factor IIF subunit alpha
ArrayExpressO94416Link to ArrayExpress
RefSeq PeptideNP_588467transcription factor TFIIF complex alpha subunit Tfg1 (predicted)
RefSeq mRNANM_001023458972h- transcription factor TFIIF complex alpha subunit Tfg1 (predicted) (tfg1), mRNA
European Nucleotide ArchiveCU329672ENA EMBL mapping
European Nucleotide ArchiveCAA22493ENA Protein Mapping
UniParcUPI0001B0628EUniProt Archive

Literature for tfg1

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Search: UK PMC or PubMed