rpl1902 (SPCC1682.14)


Gene Standard Namerpl1902 Characterisation Statuspublished
Systematic IDSPCC1682.14 Feature Typeprotein coding
Synonymsrpl19-2 Name Description
Product60S ribosomal protein L19 Product Size193aa, 22.75 kDa
Genomic Location Chromosome III, 400721-401447 (727nt); CDS:400767-401348 (582nt)

Ensembl Gene Location
GO Molecular Function
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0003735structural constituent of ribosomeISOSGD:S000002156GO_REF:0000024255
GO Biological Process
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0002181cytoplasmic translationNASGO_REF:0000051446
GO:0006412translationISOSGD:S000002156GO_REF:0000024599
GO Cellular Component
Term IDTerm NameEvidenceWith/FromReferenceCount
GO:0005829cytosolIDAPMID:168233722319
GO:0022625cytosolic large ribosomal subunitISOSGD:S000002156GO_REF:000002482
Fission Yeast Phenotype Ontology

Population Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002060viable vegetative cell populationMicroscopyrpl1902ΔNullPMID:204732893751
Microscopyrpl1902ΔNullPECO:0000005, PECO:0000137PMID:23697806

Cell Phenotype

Term IDTerm NameEvidenceAlleleExpressionConditionReferenceCount
FYPO:0002177viable vegetative cell with normal cell morphology3088
penetrance FYPO_EXT:0000001Microscopyrpl1902ΔNullPECO:0000005, PECO:0000137PMID:23697806
Transcript
Ensembl transcript structure with UTRs, exons and introns

Exons

Exon Start End
1400721401447
Protein Features

Graphical View

Ensembl protein image with mapped locations of structural domains

Protein Families and Domains

Feature ID Database InterPro Description Start End Count
PF01280 Pfam IPR000196 Ribosomal protein L19/L19e domain 3 148 2
PTHR10722 HMMPANTHER 1 193 2
1vq8P03 Gene3D IPR015974 Ribosomal protein L19/L19e, domain 3 91 148 2
1vq8P01 Gene3D IPR015972 Ribosomal protein L19/L19e, domain 1 1 54 2
0037541 SuperFamily IPR000196 Ribosomal protein L19/L19e domain 3 143 2
Coil ncoils Rabaptin coiled-coil domain 144 165 968

View domain organization at Pfam

Protein Properties

Ave. residue weight 117.89 Da
Charge 38.50
Isoelectric point 11.95
Molecular weight 22.75 kDa
Number of residues 193
Sequence
Gene Expression

Quantitative Gene Expression

Protein Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
24825during GO:0000080PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
22883during GO:0000084PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
24001during GO:0000085PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
24652during GO:0000087PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
23478during GO:0072690PECO:0000126,
PECO:0000005
single_cellmass spectrometry evidencePMID:24763107
10422.82during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
7028.69during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633

RNA Level

Molecules/Cell (average)ExtensionConditionScaleEvidenceReference
88during GO:0072690PECO:0000005,
PECO:0000014
population_wideexperimental evidencePMID:23101633
11during cell quiescence following G1 arrest due to nitrogen limitationPECO:0000005,
PECO:0000014,
PECO:0000127
population_wideexperimental evidencePMID:23101633
Species Distribution
DescriptionQualifierReferenceCount
conserved in fungi4599
conserved in eukaryotes4514
conserved in metazoa3428
conserved in vertebrates3402
conserved in archaea237
Orthologs

Manually curated orthologous groups

SpeciesGeneDescriptionLinksCount

Orthologs in Compara


Genetic Interactions

Source: BioGRID

Gene Product Evidence Reference
swd2Set1C complex subunit Swd2.1 Positive GeneticPMID:22681890
cdt2WD repeat protein Cdt2 Negative GeneticPMID:22681890
ase1antiparallel microtubule cross-linking factor Ase1 Negative GeneticPMID:22681890
hip1hira protein, histone chaperone Hip1 Negative GeneticPMID:22681890
mph1dual specificity protein kinase Mph1 Positive GeneticPMID:22681890
ace2transcription factor Ace2 Negative GeneticPMID:22681890
ubp8SAGA complex ubiquitin C-terminal hydrolase Ubp8 Positive GeneticPMID:22681890
cwf19complexed with Cdc5 protein Cwf19 Positive GeneticPMID:22681890
msn5karyopherin (predicted) Negative GeneticPMID:22681890
swd1Set1C complex subunit Swd1 Positive GeneticPMID:22681890
mis4adherin, cohesin loading factor Mis4 Negative GeneticPMID:23050226
lub1WD repeat protein Lub1 Negative GeneticPMID:22681890
elp3elongator complex subunit Elp3 (predicted) Positive GeneticPMID:22681890
SPBC56F2.08cRNA-binding protein (predicted) Negative GeneticPMID:22681890
ckb2CK2 family regulatory subunit Ckb2 (predicted) Negative GeneticPMID:22681890
ppk14serine/threonine protein kinase Ppk14 (predicted) Negative GeneticPMID:22681890
SPBC16C6.05mitochondrial translation initiation factor (predicted) Negative GeneticPMID:22681890
rok1ATP-dependent RNA helicase Rok1 (predicted) Positive GeneticPMID:22681890
SPBC16H5.13WD repeat protein, human WDR7 ortholog Negative GeneticPMID:22681890
tfs1transcription elongation factor TFIIS Positive GeneticPMID:22681890
oca2serine/threonine protein kinase Oca2 Negative GeneticPMID:22681890
hri1eIF2 alpha kinase Hri1 Negative GeneticPMID:22681890
pst2Clr6 histone deacetylase complex subunit Pst2 Positive GeneticPMID:22681890
nrm1MBF complex corepressor Nrm1 Negative GeneticPMID:22681890
res1MBF transcription factor complex subunit Res1 Negative GeneticPMID:22681890
tma23ribosome biogenesis protein Tma23 (predicted) Positive GeneticPMID:22681890
dsc3Golgi Dsc E3 ligase complex subunit Dsc3 Negative GeneticPMID:21504829
kin1microtubule affinity-regulating kinase Kin1 Negative GeneticPMID:22681890
dsk1SR protein-specific kinase Dsk1 Positive GeneticPMID:22681890
cdk11serine/threonine protein kinase cdk11 Negative GeneticPMID:22681890
pzh1serine/threonine protein phosphatase Pzh1 Negative GeneticPMID:22681890
skb1type II protein arginine N-methyltransferase Skb1 Negative GeneticPMID:22681890
swc5Swr1 complex subunit Swc5 Positive GeneticPMID:22681890
pac10prefoldin subunit 3 Pac10 (predicted) Positive GeneticPMID:22681890
tom70mitochondrial TOM complex subunit Tom70 (predicted) Positive GeneticPMID:22681890
pub3HECT-type ubiquitin-protein ligase E3 Pub3 (predicted) Negative GeneticPMID:22681890
pht1histone H2A variant H2A.Z, Pht1 Positive GeneticPMID:22681890
hip4histone promoter control protein Hip4 Negative GeneticPMID:22681890
SPAC6F6.11cpyridoxine-pyridoxal-pyridoxamine kinase (predicted) Negative GeneticPMID:22681890
rpb7DNA-directed RNA polymerase complex II subunit Rpb7 Positive GeneticPMID:22681890
SPAC17H9.13cglutamate 5-kinase (predicted) Negative GeneticPMID:22681890
med7mediator complex subunit Med7 Negative GeneticPMID:22681890
ssp2serine/threonine protein kinase Ssp2 Positive GeneticPMID:22681890
SPBC21C3.03ABC1 kinase family protein Negative GeneticPMID:22681890
shg1Set1C complex subunit Shg1 Positive GeneticPMID:22681890
prz1calcineurin responsive transcription factor Prz1 Negative GeneticPMID:22681890
elp2elongator complex subunit Elp2 (predicted) Positive GeneticPMID:22681890
dot2ESCRT II complex subunit Dot2 Positive GeneticPMID:22681890
fft3SMARCAD1 family ATP-dependent DNA helicase Fft3 Positive GeneticPMID:22681890
mst2histone acetyltransferase Mst2 Positive GeneticPMID:22681890
sum2G2/M transition checkpoint protein Sum2 Negative GeneticPMID:22681890
ufd2ubiquitin-protein ligase E4 (predicted) Positive GeneticPMID:22681890
Physical Interactions

Source: BioGRID

Gene Product Evidence Reference
lea1U2 snRNP-associated protein Lea1 (predicted) Affinity Capture-MSPMID:24442611
epe1Jmjc domain chromatin associated protein Epe1 Affinity Capture-MSPMID:24013502
bdf2BET family double bromodomain protein Bdf2 Affinity Capture-MSPMID:24013502
tea1cell end marker Tea1 Affinity Capture-MSPMID:21652630
cwf10U5 snRNP GTPase subunit Cwf10 Affinity Capture-MSPMID:24442611
External References
Database Identifier Description
NBRP SPCC1682.14 Fission yeast strain database, National BioResource Project (Japan)
YOGY SPCC1682.14 Retrieval of eukaryotic orthologs (Bähler Lab)
BioGrid SPCC1682.14 BioGRID Interaction Datasets
Expression Viewer SPCC1682.14 Cell Cycle Expression Profile (Bähler Lab)
Expression Viewer SPCC1682.14 Meiosis/Sporulation Expression Profies (Bähler Lab)
Expression Viewer SPCC1682.14 Pheromone response/mating expression profiles (Bähler Lab)
Expression Viewer SPCC1682.14 Environmental stress expression profiles (Bähler Lab)
Pomb(A) SPCC1682.14 Polyadenylation Viewer (Gullerova lab)
pombeTV SPCC1682.14 Transcriptome Viewer (Bähler Lab)
Cyclebase SPCC1682.14 Cell Cycle Data
GEO SPCC1682.14 GEO profiles
PInt SPCC1682.14 Protein-Protein Interaction Predictor (Bähler Lab)
PeptideAtlas SPCC1682.14 Peptides identified in tandem mass spectrometry proteomics experiments
SPD / RIKEN06/06C10Orfeome Localization Data
UniProtKB/SwissProtO4269960S ribosomal protein L19-B
ModBaseO42699Database of comparative protein structure models
STRINGO42699Network display of known and predicted interactions and functional associations
RefSeq PeptideNP_58780760S ribosomal protein L19
RefSeq mRNANM_001022800972h- 60S ribosomal protein L19 (rpl1902), mRNA
European Nucleotide ArchiveAB010048ENA EMBL mapping
European Nucleotide ArchiveCAA20680.1ENA Protein Mapping
UniParcUPI000006B1E7UniProt Archive

Literature for rpl1902

Search: Europe PMC or PubMed

Release Version: PomBase:23_46 - 30 Aug 2014